@article {2436,
	title = {Combining magnetic resonance imaging and evoked potentials enhances machine learning prediction of multiple sclerosis disability worsening},
	journal = {Frontiers in Immunology},
	volume = {17},
	year = {2026},
	doi = {https://doi.org/10.3389/fimmu.2026.1625837},
	author = {Sofie Aerts and Lorin Werthen-Brabants and Hamza Khan and Diana Giraldo and Edward De Brouwer and Lotte Geys and Veronica Popescu and Jan Sijbers and Henry C. Woodruff and Tom Dhaene and Dirk Deschrijver and Bart Van Wijmeersch and Philippe Lambin and Liesbet M. Peeters}
}
@article {2453,
	title = {Longitudinal brain-age predictions comprising long-duration spaceflight missions},
	journal = {npj Microgravity},
	volume = {12},
	year = {2026},
	month = {Jan-12-2026},
	doi = {10.1038/s41526-026-00575-3},
	url = {https://www.nature.com/articles/s41526-026-00575-3https://www.nature.com/articles/s41526-026-00575-3.pdfhttps://www.nature.com/articles/s41526-026-00575-3https://www.nature.com/articles/s41526-026-00575-3.pdf},
	author = {Tang, Ge and Patil, Kaustubh R. and Hoffstaedter, Felix and More, Shammi and Eickhoff, Simon B. and Steven Jillings and Ben Jeurissen and Tomilovskaya, Elena and Gerlach, Darius and Nosikova, Inna and Riabova, Alexandra and Pechenkova, Ekaterina and Petrovichev, Viktor and Rukavishnikov, Ilya and Makovskaya, Lyudmila and Ombergen, Angelique Van and Wuyts, Floris L. and Eulenburg, Peter zu}
}
@article {2431,
	title = {Physiological cerebrospinal fluid interactions between brain and eye structures are altered after long-duration spaceflight},
	journal = {Experimental Physiology},
	year = {2026},
	doi = {http://doi.org/10.1113/EP093112},
	author = {Ge Tang and Steven Jillings and Ben Jeurissen and Elena Tomilovskaya and Inna Nosikova and Alexandra Riabova and Ekaterina V. Pechenkova and Petrovichev, Victor and Ilya Rukavishnikov and Stefan Sunaert and Paul M Parizel and Lyudmila Makovskaya and Valentin Sinitsyn and Jan Sijbers and Jitka Annen and Steven S L Laureys and Angelique Van Ombergen and Seyed-Ahmad Ahmadi and Floris L Wuyts and Peter zu Eulenburg}
}
@inproceedings {2448,
	title = {Towards X-ray-based inspection of corrosion in maritime infrastructure},
	booktitle = {15th Conference on Industrial Computed Tomography (iCT), 10 - 13 February 2026, Linz, Austria (iCT 2026) Special Issue of e-Journal of Nondestructive Testing (eJNDT) ISSN 1435-4934 },
	volume = {31(3)},
	year = {2026},
	doi = {https://doi.org/10.58286/32583},
	author = {Joaquim G. Sanctorum and Nathan Bekaert and Wikke Witteveen and Geert Potters and Jan Sijbers and Jan De Beenhouwer}
}
@article {2457,
	title = {Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3{\textemdash}Ex vivo imaging: Data processing, comparisons with microscopy, and tractography},
	journal = {Magnetic Resonance in Medicine},
	volume = {93},
	year = {2025},
	month = {Jan-06-2025},
	pages = {2561 - 2582},
	issn = {0740-3194},
	doi = {10.1002/mrm.v93.610.1002/mrm.30424},
	url = {https://onlinelibrary.wiley.com/toc/15222594/93/6https://onlinelibrary.wiley.com/doi/10.1002/mrm.30424https://onlinelibrary.wiley.com/doi/pdf/10.1002/mrm.30424},
	author = {Schilling, Kurt G. and Howard, Amy F. D. and Grussu, Francesco and Ianus, Andrada and Hansen, Brian and Barrett, Rachel L. C. and Aggarwal, Manisha and Michielse, Stijn and Nasrallah, Fatima and Syeda, Warda and Wang, Nian and Veraart, Jelle and Roebroeck, Alard and Bagdasarian, Andrew F. and Eichner, Cornelius and Sepehrband, Farshid and Zimmermann, Jan and Soustelle, Lucas and Bowman, Christien and Tendler, Benjamin C. and Hertanu, Andreea and Ben Jeurissen and Verhoye, Marleen and Frydman, Lucio and van de Looij, Yohan and Hike, David and Dunn, Jeff F. and Miller, Karla and Landman, Bennett A. and Shemesh, Noam and Anderson, Adam and McKinnon, Emilie and Farquharson, Shawna and Dell{\textquoteright}Acqua, Flavio and Pierpaoli, Carlo and Drobnjak, Ivana and Leemans, Alexander and Harkins, Kevin D. and Descoteaux, Maxime and Xu, Duan and Huang, Hao and Santin, Mathieu D. and Grant, Samuel C. and Obenaus, Andre and Kim, Gene S. and Wu, Dan and Le Bihan, Denis and Blackband, Stephen J. and Ciobanu, Luisa and Els Fieremans and Bai, Ruiliang and Leergaard, Trygve B. and Zhang, Jiangyang and Dyrby, Tim B. and Johnson, G. Allan and Cohen-Adad, Julien and Budde, Matthew D. and Jelescu, Ileana O.}
}
@article {2455,
	title = {Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging},
	journal = {Magnetic Resonance in Medicine},
	volume = {93},
	year = {2025},
	month = {Jan-06-2025},
	pages = {2507 - 2534},
	issn = {0740-3194},
	doi = {10.1002/mrm.v93.610.1002/mrm.30429},
	url = {https://onlinelibrary.wiley.com/toc/15222594/93/6https://onlinelibrary.wiley.com/doi/10.1002/mrm.30429https://onlinelibrary.wiley.com/doi/pdf/10.1002/mrm.30429},
	author = {Jelescu, Ileana O. and Grussu, Francesco and Ianus, Andrada and Hansen, Brian and Barrett, Rachel L. C. and Aggarwal, Manisha and Michielse, Stijn and Nasrallah, Fatima and Syeda, Warda and Wang, Nian and Veraart, Jelle and Roebroeck, Alard and Bagdasarian, Andrew F. and Eichner, Cornelius and Sepehrband, Farshid and Zimmermann, Jan and Soustelle, Lucas and Bowman, Christien and Tendler, Benjamin C. and Hertanu, Andreea and Ben Jeurissen and Verhoye, Marleen and Frydman, Lucio and van de Looij, Yohan and Hike, David and Dunn, Jeff F. and Miller, Karla and Landman, Bennett A. and Shemesh, Noam and Anderson, Adam and McKinnon, Emilie and Farquharson, Shawna and Dell{\textquoteright}Acqua, Flavio and Pierpaoli, Carlo and Drobnjak, Ivana and Leemans, Alexander and Harkins, Kevin D. and Descoteaux, Maxime and Xu, Duan and Huang, Hao and Santin, Mathieu D. and Grant, Samuel C. and Obenaus, Andre and Kim, Gene S. and Wu, Dan and Le Bihan, Denis and Blackband, Stephen J. and Ciobanu, Luisa and Els Fieremans and Bai, Ruiliang and Leergaard, Trygve B. and Zhang, Jiangyang and Dyrby, Tim B. and Johnson, G. Allan and Cohen-Adad, Julien and Budde, Matthew D. and Schilling, Kurt G.}
}
@article {2456,
	title = {Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2{\textemdash}Ex vivo imaging: Added value and acquisition},
	journal = {Magnetic Resonance in Medicine},
	volume = {93},
	year = {2025},
	month = {Jan-06-2025},
	pages = {2535 - 2560},
	issn = {0740-3194},
	doi = {10.1002/mrm.v93.610.1002/mrm.30435},
	url = {https://onlinelibrary.wiley.com/toc/15222594/93/6https://onlinelibrary.wiley.com/doi/10.1002/mrm.30435https://onlinelibrary.wiley.com/doi/pdf/10.1002/mrm.30435},
	author = {Schilling, Kurt G. and Grussu, Francesco and Ianus, Andrada and Hansen, Brian and Howard, Amy F. D. and Barrett, Rachel L. C. and Aggarwal, Manisha and Michielse, Stijn and Nasrallah, Fatima and Syeda, Warda and Wang, Nian and Veraart, Jelle and Roebroeck, Alard and Bagdasarian, Andrew F. and Eichner, Cornelius and Sepehrband, Farshid and Zimmermann, Jan and Soustelle, Lucas and Bowman, Christien and Tendler, Benjamin C. and Hertanu, Andreea and Ben Jeurissen and Verhoye, Marleen and Frydman, Lucio and van de Looij, Yohan and Hike, David and Dunn, Jeff F. and Miller, Karla and Landman, Bennett A. and Shemesh, Noam and Anderson, Adam and McKinnon, Emilie and Farquharson, Shawna and Dell{\textquoteright}Acqua, Flavio and Pierpaoli, Carlo and Drobnjak, Ivana and Leemans, Alexander and Harkins, Kevin D. and Descoteaux, Maxime and Xu, Duan and Huang, Hao and Santin, Mathieu D. and Grant, Samuel C. and Obenaus, Andre and Kim, Gene S. and Wu, Dan and Le Bihan, Denis and Blackband, Stephen J. and Ciobanu, Luisa and Els Fieremans and Bai, Ruiliang and Leergaard, Trygve B. and Zhang, Jiangyang and Dyrby, Tim B. and Johnson, G. Allan and Cohen-Adad, Julien and Budde, Matthew D. and Jelescu, Ileana O.}
}
@article {2426,
	title = {Leveraging Hand-Crafted Radiomics on Multicenter FLAIR MRI for Predicting Disability Worsening in People with Multiple Sclerosis},
	journal = {Front. Neurosci.},
	volume = {19},
	year = {2025},
	doi = {https://doi.org/10.3389/fnins.2025.1610401},
	author = {Hamza Khan and Diana Giraldo and Henry C. Woodruff and Lorin Werthen-Brabants and Shruti Atul Mali and Sina Amirrajab and Edward De Brouwer and Veronica Popescu and Bart Van Wijmeersch and Oliver Gerlach and Jan Sijbers and Liesbet M. Peeters and Philippe Lambin}
}
@article {2399,
	title = {Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget{\textquoteright}s Disease of Bone},
	journal = {Calcified Tissue International},
	volume = {116},
	year = {2025},
	pages = {1-15},
	author = {Yentl Huybrechts and Rapha{\"e}l De Ridder and Dylan Bergen and Bjorn De Samber and Eveline Boudin and Francesca Tonelli and Dries Knapen and Lucia Vergauwen and Dorien Schepers and Evelien Van Dijck and Qiao Tong and Anja Verhulst and Jan De Beenhouwer and Jan Sijbers and Chrissy Hammond and Antonella Forlino and Geert Mortier and Paul Coucke and P Eckhard Witten and Ronald Young Kwon and Andy Willaert and Gretl Hendrickx and Wim Van Hul}
}
@article {2454,
	title = {MReye-Seg: development and validation of an automated MRI pipeline for standardised ocular and orbital morphometrics},
	journal = {Eye},
	volume = {39},
	year = {2025},
	month = {Jan-12-2025},
	pages = {3294 - 3305},
	issn = {0950-222X},
	doi = {10.1038/s41433-025-04044-1},
	url = {https://www.nature.com/articles/s41433-025-04044-1https://www.nature.com/articles/s41433-025-04044-1.pdfhttps://www.nature.com/articles/s41433-025-04044-1.pdfhttps://www.nature.com/articles/s41433-025-04044-1},
	author = {Tang, Ge and Ahmadi, Seyed-Ahmad and Steven Jillings and Ben Jeurissen and Tomilovskaya, Elena and Nosikova, Inna and Ryabova, Alexandra and Pechenkova, Ekaterina and Petrovichev, Viktor and Rukavishnikov, Ilya and Velten, Theresa and Gripshi, Marina and Van Ombergen, Angelique and Wuyts, Floris L. and zu Eulenburg, Peter}
}
@conference {2460,
	title = {Fixel-based analysis of multi-shell diffusion MRI reveals white matter changes after long-duration spaceflight},
	year = {2024},
	pages = {2057},
	author = {Ben Jeurissen and Steven Jillings and Giraldo, Diana L and Van Ombergen, Angelique and Tomilovskaya, Elena and Pechenkova, Ekaterina and Rukavishnikov, Ilya and Petrovichev, Victor and Sijbers, Jan and zu Eulenburg, Peter and Wuyts, Floris L}
}
@article {2364,
	title = {Perceptual super-resolution in multiple sclerosis MRI},
	journal = {Frontiers in Neuroscience},
	volume = {18},
	year = {2024},
	doi = {10.3389/fnins.2024.1473132},
	author = {Diana Giraldo and Hamza Khan and Gustavo Pineda and Liang, Zhihua and Alfonso Lozano and Bart Van Mijweersch and Henry C. Woodruff and Philippe Lambin and Romero, Eduardo and Liesbet M. Peeters and Jan Sijbers}
}
@inproceedings {2293,
	title = {Defect detectability analysis via Probability of defect detection between traditional and deep learning methods in numerical simulations},
	booktitle = {e-Journal of Nondestructive Testing},
	volume = {28},
	year = {2023},
	issn = {1435-4934 },
	doi = {doi.org/10.58286/27716},
	author = {Miroslav Yosifov and Patrick Weinberger and Michael Reiter and Bernhard Fr{\"o}hler and Jan De Beenhouwer and Jan Sijbers and Johann Kastner and Christoph Heinzl}
}
@conference {2300,
	title = {Exploring the Correlation between Disability Status and Brain Volumetric Measurements Using Real-World Retrospective Magnetic Resonance Images in People with Multiple Sclerosis},
	number = {1637},
	year = {2023},
	address = {October 11-13, Milan, Italy},
	abstract = {This study investigated whether retrospective real-world MR image databases can be used to obtain MR-based biomarkers of multiple sclerosis (MS) disability by examining correlations between Expanded Disability Status Scale (EDSS) scores and volumetric measurements from reconstructed T2-weighted fluid-attenuated inversion recovery (FLAIR) in people with MS (PwMS).},
	author = {Hamza Khan and Diana Giraldo and Quinten Beirinckx and Jan Sijbers and Philippe Lambin and Henry C. Woodruff and Liesbet M. Peeters}
}
@article {2270,
	title = {Prolonged microgravity induces reversible and persistent changes on human cerebral connectivity},
	journal = {Communications Biology},
	volume = {6},
	year = {2023},
	doi = {https://doi.org/10.1038/s42003-022-04382-w},
	author = {Steven Jillings and Ekaterina V. Pechenkova and Elena Tomilovskaya and Ilya Rukavishnikov and Ben Jeurissen and Angelique Van Ombergen and Nosikova, Inna and Alena Rumshiskaya and Liudmila Litvinova and Annen, Jitka and Chloe De Laet and Catho Schoenmaekers and Jan Sijbers and Petrovichev, Victor and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and zu Eulenburg, P and Steven S L Laureys and Athena Demertzi and Floris L Wuyts}
}
@article {2318,
	title = {Study on the Potential of Oil Spill Monitoring in a Port Environment Using Optical Reflectance},
	journal = {Remote Sensing},
	year = {2023},
	month = {2023/10/13},
	abstract = {In this work, we studied the potential of the visible, near-infrared, and shortwave infrared wavelength regions for monitoring oil spill incidents using optical reflectance. First, a simple physical model was designed for accurate oil thickness and volume estimation using optical reflectance. The developed method was made invariant to changes in acquisition and illumination conditions. In the next step, an algorithm based on an artificial neural network was designed to detect spilled oil. The training samples that are required to optimize the parameters of the network were generated by utilizing the proposed physical model. To validate the method, experiments were conducted in laboratory and outdoor scenarios for detection and thickness/volume estimation on four different oil types. In particular, we developed hyperspectral datasets of oil samples with varying thickness between 500 {\textmu}m and 5000 {\textmu}m acquired using two different sensors, an Agrispec spectrometer and an Imec snapscan shortwave infrared hyperspectral camera, in strictly controlled experimental settings. To demonstrate the potential of the proposed method in outdoor environments using solely the visible wavelength region, we monitored the evolution of artificially spilled oil in an outdoor scene with an RGB camera mounted on a drone.},
	doi = {10.3390/rs15204950},
	author = {Bikram Koirala and Nicholus Mboga and Robrecht Moelans and Els Knaeps and Seppe Sels and Frederik Winters and Svetlana Samsonova and Steve Vanlanduit and Paul Scheunders}
}
@article {2285,
	title = {Towards material and process agnostic features for the classification of pore types in metal additive manufacturing},
	journal = {Materials \& Design},
	volume = {227},
	year = {2023},
	pages = {111757},
	doi = {10.1016/j.matdes.2023.111757},
	author = {M. Vandecasteele and R. Heylen and Domenico Iuso and A. Thanki and W. Philips and A. Witvrouw and D. Verhees and B. G. Booth}
}
@article {2286,
	title = {Use of support vector machines approach via ComBat harmonized diffusion tensor imaging for the diagnosis and prognosis of mild traumatic brain injury: a CENTER-TBI study},
	journal = {Journal of Neurotrauma},
	volume = {40},
	year = {2023},
	pages = {1317-1338},
	doi = {https://doi.org/10.1089/neu.2022.0365},
	author = {Maira Siqueira Pinto and Stefan Winzeck and Evgenios N. Kornaropoulos and Sophie Richter and Roberto Paolella and Marta M. Correia and Ben Glocker and Guy Williams and Anne Vik and Jussi Posti and Asta Kristine H{\r a}berg and Jonas Stenberg and Pieter-Jan Guns and Arnold Jan den Dekker and David K. Menon and Jan Sijbers and Pieter Van Dyck and Virginia F. J. Newcombe}
}
@article {2219,
	title = {Using particle systems for mitral valve segmentation from 3D transoesophageal echocardiography (3D TOE) - a proof of concept},
	journal = {Computer Methods in Biomechanics and Biomedical Engineering: Imaging \& Visualization},
	volume = {11},
	year = {2023},
	pages = {112-120},
	doi = {10.1080/21681163.2022.2058416},
	url = {https://doi.org/10.1080/21681163.2022.2058416},
	author = {Patricia Lopes and Paul Van Herck and Eefje Verhoelst and Roel Wirix-Speetjens and Jan Sijbers and Johan Bosmans and Jos Vander Sloten}
}
@article {2204,
	title = {3D total variation denoising in X-CT imaging applied to pore extraction in additively manufactured parts},
	journal = {Measurement Science and Technology},
	volume = {33},
	year = {2022},
	pages = {1-12},
	doi = {10.1088/1361-6501/ac459a},
	author = {Rob Heylen and Aditi Thanki and Dries Verhees and Domenico Iuso and Jan De Beenhouwer and Jan Sijbers and Ann Witvrouw and Han Haitjema and Abdellatif Bey-Temsamani}
}
@inproceedings {2239,
	title = {An accelerated motion-compensated iterative reconstruction technique for dynamic computed tomography},
	booktitle = {Proc. SPIE 12242, Developments in X-Ray Tomography XIV, 122421F},
	year = {2022},
	address = {San Diego, CA, United States},
	doi = {https://doi.org/10.1117/12.2631570},
	author = {Anh-Tuan Nguyen and Jens Renders and Jeroen Soete and Martine Wevers and Jan Sijbers and Jan De Beenhouwer}
}
@inproceedings {2192,
	title = {Analytic derivatives of scaling motion-compensated projection operators for dynamic computed tomography},
	booktitle = {e-Journal of Nondestructive Testing},
	volume = { 27 (3)},
	year = {2022},
	pages = {1-5},
	doi = {https://doi.org/10.58286/26588},
	url = {https://www.ndt.net/search/docs.php3?id=26588},
	author = {Anh-Tuan Nguyen and Jens Renders and Jeroen Soete and Martine Wevers and Jan Sijbers and Jan De Beenhouwer}
}
@article {2273,
	title = {Automated Mitral Valve Assessment for Transcatheter Mitral Valve Replacement (TMVR) Planning},
	journal = {Frontiers in Bioengineering and Biotechnology},
	volume = {16},
	year = {2022},
	pages = {1-13},
	doi = {https://doi.org/10.3389/fbioe.2022.1033713},
	author = {Lopes, Patricia and Paul Van Herck and J. Ooms and N. Van Mieghem and Wirix-Speetjens, Roel and Jan Sijbers and Vander Sloten, Jos and Bosmans, Johan}
}
@article {2216,
	title = {Brain Connectometry Changes in Space Travelers After Long-Duration Spaceflight},
	journal = {Front. Neural Circuits},
	volume = {16},
	year = {2022},
	doi = {https://doi.org/10.3389/fncir.2022.815838},
	author = {Andrei Doroshin and Steven Jillings and Ben Jeurissen and Elena Tomilovskaya and Ekaterina V. Pechenkova and Nosikova, Inna and Alena Rumshiskaya and Liudmila Litvinova and Ilya Rukavishnikov and Chloe De Laet and Catho Schoenmaekers and Jan Sijbers and Steven S L Laureys and Petrovichev, Victor and Angelique Van Ombergen and Jitka Annen and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and zu Eulenburg, Peter and Karol Osipowicz and Floris L Wuyts}
}
@article {2215,
	title = {The effect of prolonged Spaceflight on Cerebrospinal Fluid and Perivascular Spaces of Astronauts and Cosmonauts},
	journal = {PNAS},
	volume = {119},
	year = {2022},
	chapter = {e2120439119},
	doi = {https://doi.org/10.1073/pnas.2120439119},
	author = {Giuseppe Barisano and Farshid Sepehrband and Heather R. Collins and Steven Jillings and Ben Jeurissen and Andrew J. Taylor and Catho Schoenmaekers and Chloe De Laet and Ilya Rukavishnikov and Inna Nosikova and Alena Rumshiskaya and Jitka Annen and Jan Sijbers and Steven S L Laureys and Angelique Van Ombergen and Petrovichev, Victor and Valentin Sinitsyn and Ekaterina V. Pechenkova and Alexey Grishin and Peter zu Eulenburg and Meng Law and Stefan Sunaert and Paul M. Parizel and Elena Tomilovskaya and Donna Roberts and Floris L Wuyts}
}
@article {2249,
	title = {The sqstm1tmΔUBA zebrafish model, a proof-of-concept in vivo model for Paget{\textquoteright}s disease of bone?},
	journal = {Bone Reports},
	volume = {16},
	year = {2022},
	pages = {75-76},
	doi = {10.1016/j.bonr.2022.101483},
	author = {Yentl Huybrechts and Rapha{\"e}l De Ridder and Bjorn De Samber and Eveline Boudin and Francesca Tonelli and Dries Knapen and Dorien Schepers and Jan De Beenhouwer and Jan Sijbers and Antonella Forlino and Paul Coucke and P. Eckhard Witten and Ronald Kwon and Andy Willaert and Gretl Hendrickx and Wim Van Hul}
}
@article {2179,
	title = {On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: chronicles of the MEMENTO challenge},
	journal = {NeuroImage},
	volume = {240},
	year = {2021},
	doi = {https://doi.org/10.1016/j.neuroimage.2021.118367},
	author = {Alberto De Luca and Andrada Ianus and Alexander Leemans and Marco Palombo and Noam Shemesh and Hui Zhang and Daniel C Alexander and Markus Nilsson and Martijn Froeling and Geert-Jan Biessels and Mauro Zucchelli and Matteo Frigo and Enes Albay and Sara Sedlar and Abib Alimi and Samuel Deslauriers-Gauthier and Rachid Deriche and Rutger Fick and Maryam Afzali and Tomasz Pieciak and Fabian Bogusz and Santiago Aja-Fernandez and Evren Ozarslan and Derek K. Jones and Haoze Chen and Mingwu Jin and Zhijie Zhang and Fenxiang Wang and Vishwesh Nath and Prasanna Parvathaneni and Jan Morez and Jan Sijbers and Ben Jeurissen and Shreyas and Fadnavis and Stefan Endres and Ariel Rokem and Eleftherios Garyfallidis and Irina Sanchez and Vesna Prchkovska and Paulo Rodrigues and Bennet A. Landman and Kurt G Schilling}
}
@mastersthesis {2140,
	title = {The impact of long-duration spaceflight on brain structure and function},
	volume = {Doctor of Science},
	year = {2021},
	school = {University of Antwerp},
	type = {PhD thesis},
	abstract = {In over half a century of crewed missions to space, many different effects of spaceflight on the human body have been uncovered so far. However, little focus has been directed to investigating how space stressors affect the human brain. The largest body of work in this dissertation describes pioneering findings on brain structural and functional changes after spaceflight in Roscosmos cosmonauts by means of multi-modal magnetic resonance imaging (MRI) in a longitudinal and prospective design. Structural MRI modalities, such as T1-weighted and diffusion MRI, were used to unravel macroscopic volume and microstructural brain tissue composition changes. We found a widespread redistribution of the cerebrospinal fluid (CSF) with secondary mechanistic effects on the grey matter (GM) tissue. We also revealed increased neural tissue volume in motor regions of the brain that suggest evidence for structural brain adaptations, also known as neuroplasticity, associated with altered motor strategies in space. Most CSF changes after spaceflight were still detectable more than half a year after return to Earth, while the GM changes after spaceflight partially reversed in the long term. In addition, functional MRI data was acquired in these cosmonauts to study functional reorganisation of the brain after spaceflight, showing numerous functional connectivity (FC) alterations after spaceflight. Some of these changes persisted in the longer-term, whereas other changes returned back to pre-flight levels. Furthermore, this work also describes the experimental work and preliminary analyses of several Earth-based models. One is a longitudinal MRI pilot study in hindlimb-unloaded (HLU) mice, inducing fluid shifts to the head region, in order to better understand the consequence of these fluid shifts on the brain. A second study was performed in fighter pilots as a model for exposure to high g-levels and sensory conflicts, in which FC was compared to that in a control group. This work rendered a vast increase in available information on structural and functional brain changes after spaceflight compared to several years ago. In the future, the underlying mechanisms of the observed findings need to be understood in more detail. Ultimately, we aim to characterise the effects space stressors have on the brain, to then attempt to mitigate these changes through countermeasures and characterise beneficial coping mechanisms that we can enhance, in order to be fully prepared for future exploration missions into deep space.},
	author = {Steven Jillings}
}
@conference {2174,
	title = {Outcome prediction in Mild Traumatic Brain Injury patients using conventional and diffusion MRI via Support Vector Machine: A CENTER-TBI study},
	year = {2021},
	author = {Maira Siqueira Pinto and Stefan Winzeck and Marta M. Correia and Evgenios N. Kornaropoulos and David K. Menon and Ben Glocker and Arnold Jan den Dekker and Jan Sijbers and Pieter-Jan Guns and Pieter Van Dyck and Virginia F. J. Newcombe}
}
@conference {2185,
	title = {Outcome prediction of mild traumatic brain injury using support vector machine based on longitudinal MRdiffusion imaging from CENTER-TBI},
	volume = {34},
	year = {2021},
	pages = {S54},
	doi = {10.1007/s10334-021-00947-8},
	author = {Maira Siqueira Pinto and Stefan Winzeck and S. Richter and Marta M. Correia and Evgenios N. Kornaropoulos and David K. Menon and Ben Glocker and Pieter-Jan Guns and Arnold Jan den Dekker and Jan Sijbers and Virginia F. J. Newcombe and Pieter Van Dyck}
}
@conference {Jillings2020-nb,
	title = {Diffusion MRI reveals macro- and microstructural changes in cosmonauts{\textquoteright} brains after long-duration spaceflight},
	year = {2020},
	pages = {4531},
	author = {Steven Jillings and Angelique Van Ombergen and Tomilovskaya, E and Rumshiskaya, A and Litvinova, L and Nosikova, I and Pechenkova, E and Rukavishnikov, I and Kozlovskaya, I and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and Petrovichev, V and Laureys, S and zu Eulenburg, P and Jan Sijbers and Floris L Wuyts and Ben Jeurissen}
}
@article {2074,
	title = {Macro- and microstructural changes in cosmonauts{\textquoteright} brains after long-duration spaceflight},
	journal = {Science Advances},
	volume = {6},
	year = {2020},
	month = {Apr-09-2020},
	pages = {eaaz9488},
	abstract = {Long-duration spaceflight causes widespread physiological changes, although its effect on brain structure remains poorly understood. In this work, we acquired diffusion magnetic resonance imaging to investigate alterations of white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF) compositions in each voxel, before, shortly after, and 7 months after long-duration spaceflight. We found increased WM in the cerebellum after spaceflight, providing the first clear evidence of sensorimotor neuroplasticity. At the region of interest level, this increase persisted 7 months after return to Earth. We also observe a widespread redistribution of CSF, with concomitant changes in the voxel fractions of adjacent GM. We show that these GM changes are the result of morphological changes rather than net tissue loss, which remained unclear from previous studies. Our study provides evidence of spaceflight-induced neuroplasticity to adapt motor strategies in space and evidence of fluid shift{\textendash}induced mechanical changes in the brain.},
	doi = {10.1126/sciadv.aaz9488},
	url = {https://advances.sciencemag.org/content/6/36/eaaz9488},
	author = {Steven Jillings and Angelique Van Ombergen and Tomilovskaya, Elena and Rumshiskaya, Alena and Litvinova, Liudmila and Nosikova, Inna and Pechenkova, Ekaterina and Rukavishnikov, Ilya and Kozlovskaya, Inessa B. and Manko, Olga and Danilichev, Sergey and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and Petrovichev, Victor and Laureys, Steven and zu Eulenburg, Peter and Jan Sijbers and Floris L Wuyts and Ben Jeurissen}
}
@article {1964,
	title = {Alterations of Functional Brain Connectivity After Long-Duration Spaceflight as Revealed by fMRI.},
	journal = {Front Physiol},
	volume = {10},
	year = {2019},
	pages = {1-23},
	abstract = {<p>The present study reports alterations of task-based functional brain connectivity in a group of 11 cosmonauts after a long-duration spaceflight, compared to a healthy control group not involved in the space program. To elicit the postural and locomotor sensorimotor mechanisms that are usually most significantly impaired when space travelers return to Earth, a plantar stimulation paradigm was used in a block design fMRI study. The motor control system activated by the plantar stimulation involved the pre-central and post-central gyri, SMA, SII/operculum, and, to a lesser degree, the insular cortex and cerebellum. While no post-flight alterations were observed in terms of activation, the network-based statistics approach revealed task-specific functional connectivity modifications within a broader set of regions involving the activation sites along with other parts of the sensorimotor neural network and the visual, proprioceptive, and vestibular systems. The most notable findings included a post-flight increase in the stimulation-specific connectivity of the right posterior supramarginal gyrus with the rest of the brain; a strengthening of connections between the left and right insulae; decreased connectivity of the vestibular nuclei, right inferior parietal cortex (BA40) and cerebellum with areas associated with motor, visual, vestibular, and proprioception functions; and decreased coupling of the cerebellum with the visual cortex and the right inferior parietal cortex. The severity of space motion sickness symptoms was found to correlate with a post- to pre-flight difference in connectivity between the right supramarginal gyrus and the left anterior insula. Due to the complex nature and rapid dynamics of adaptation to gravity alterations, the post-flight findings might be attributed to both the long-term microgravity exposure and to the readaptation to Earth{\textquoteright}s gravity that took place between the landing and post-flight MRI session. Nevertheless, the results have implications for the multisensory reweighting and gravitational motor system theories, generating hypotheses to be tested in future research.</p>},
	issn = {1664-042X},
	doi = {10.3389/fphys.2019.00761},
	author = {Pechenkova, Ekaterina and Nosikova, Inna and Rumshiskaya, Alena and Litvinova, Liudmila and Rukavishnikov, Ilya and Mershina, Elena and Valentin Sinitsyn and Angelique Van Ombergen and Ben Jeurissen and Steven Jillings and Laureys, Steven and Jan Sijbers and Grishin, Alexey and Chernikova, Ludmila and Naumov, Ivan and Kornilova, Ludmila and Floris L Wuyts and Tomilovskaya, Elena and Kozlovskaya, Inessa}
}
@article {2007,
	title = {Analysis of hyperspectral images for detection of drought stress and recovery in maize plants in a high-throughput phenotyping platform},
	journal = {Computers and Electronics in Agriculture},
	volume = {162},
	year = {2019},
	pages = {749-758},
	doi = {https://doi.org/10.1016/j.compag.2019.05.018},
	author = {Mohd Shahrimie Mohd Asaari and Stien Mertens and Stijn Dhondt and Dirk Inze and Nathalie Wuyts and Paul Scheunders}
}
@article {1941,
	title = {Brain ventricular volume changes induced by long-duration spaceflight},
	journal = {Proceedings of the National Academy of Sciences},
	volume = {116},
	year = {2019},
	pages = {10531-10536},
	abstract = {Long-duration spaceflight induces detrimental changes in human physiology due to microgravity. One example is a cephalic fluid shift. Here, we prospectively investigated the quantitative changes in cerebrospinal fluid (CSF) volume of the brain ventricular regions in space crew by means of a region of interest, observer-independent analysis on structural brain MRI scans. MRI scans were collected before the mission, shortly after and 7 mo after return to Earth. We found a significant increase in lateral and third ventricles at postflight and a trend to normalization at follow-up, but still significantly increased ventricular volumes. The observed spatiotemporal pattern of CSF compartment enlargement and recovery points to a reduced CSF resorption in microgravity as the underlying cause.Long-duration spaceflight induces detrimental changes in human physiology. Its residual effects and mechanisms remain unclear. We prospectively investigated the changes in cerebrospinal fluid (CSF) volume of the brain ventricular regions in space crew by means of a region of interest analysis on structural brain scans. Cosmonaut MRI data were investigated preflight (n = 11), postflight (n = 11), and at long-term follow-up 7 mo after landing (n = 7). Post hoc analyses revealed a significant difference between preflight and postflight values for all supratentorial ventricular structures, i.e., lateral ventricle (mean \% change {\textpm} SE = 13.3 {\textpm} 1.9), third ventricle (mean \% change {\textpm} SE = 10.4 {\textpm} 1.1), and the total ventricular volume (mean \% change {\textpm} SE = 11.6 {\textpm} 1.5) (all P \&lt; 0.0001), with higher volumes at postflight. At follow-up, these structures did not quite reach baseline levels, with still residual increases in volume for the lateral ventricle (mean \% change {\textpm} SE = 7.7 {\textpm} 1.6; P = 0.0009), the third ventricle (mean \% change {\textpm} SE = 4.7 {\textpm} 1.3; P = 0.0063), and the total ventricular volume (mean \% change {\textpm} SE = 6.4 {\textpm} 1.3; P = 0.0008). This spatiotemporal pattern of CSF compartment enlargement and recovery points to a reduced CSF resorption in microgravity as the underlying cause. Our results warrant more detailed and longer longitudinal follow-up. The clinical impact of our findings on the long-term cosmonauts{\textquoteright} health and their relation to ocular changes reported in space travelers requires further prospective studies.},
	issn = {0027-8424},
	doi = {10.1073/pnas.1820354116},
	url = {https://www.pnas.org/content/early/2019/05/01/1820354116},
	author = {Angelique Van Ombergen and Steven Jillings and Ben Jeurissen and Tomilovskaya, Elena and Alena Rumshiskaya and Liudmila Litvinova and Nosikova, Inna and Ekaterina V. Pechenkova and Ilya Rukavishnikov and Manko, Olga and Danylichev, Sergey and R{\"u}hl, R. Maxine and Inessa B. Kozlovskaya and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and Steven S L Laureys and Jan Sijbers and zu Eulenburg, Peter and Floris L Wuyts}
}
@conference {Jillings2019-al,
	title = {Diffusion-weighted imaging reveals structural brain changes in cosmonauts after long-duration spaceflight},
	volume = {32 (Suppl. 1)},
	year = {2019},
	pages = {Magn Reson Mater Phy. 2019; 32(Suppl. 1):S101},
	author = {Steven Jillings and Angelique Van Ombergen and Tomilovskaya, E and Laureys, S and zu Eulenburg, P and Stefan Sunaert and Jan Sijbers and Floris L Wuyts and Ben Jeurissen}
}
@conference {Jeurissen2019-sb,
	title = {Improved precision and accuracy in q-space trajectory imaging by model-based super-resolution reconstruction},
	year = {2019},
	pages = {556},
	author = {Ben Jeurissen and Westin, Carl-Fredrik and Jan Sijbers and Szczepankiewicz, Filip}
}
@inproceedings {1918,
	title = {An Interactive Visual Comparison Tool for 3D Volume Datasets represented by Nonlinearly Scaled 1D Line Plots through Space-filling Curves},
	booktitle = {9th Conference on Industrial Computed Tomography},
	year = {2019},
	address = {Padova, Italy},
	author = {Johannes Weissenb{\"o}ck and Bernhard Fr{\"o}hler and Eduard Gr{\"o}ller and Jonathan Sanctorum and Jan De Beenhouwer and Jan Sijbers and Santhosh Ayalur Karunakaran and Helmuth Hoeller and Johann Kastner and Christoph Heinzl}
}
@conference {Wuyts2019-xr,
	title = {Novel insight on effect and recovery of long-duration spaceflight on the ventricles of the space traveller{\textquoteright}s brain},
	volume = {2019},
	year = {2019},
	pages = {IAC{\textendash}19_A1_2_4_x51230},
	publisher = {International Astronautical Federation},
	author = {Floris L Wuyts and Steven Jillings and Angelique Van Ombergen and Ben Jeurissen and Tomilovskaya, Elena and Rumshiskaya, Alena and Litvinova, Liudmila and Nosikova, Inna and Pechenkova, Ekaterina and Rukavishnikov, Ilya and others}
}
@inproceedings {1884,
	title = {Simulated grating-based x-ray phase contrast images of CFRP-like objects},
	booktitle = {9th Conference on Industrial Computed Tomography},
	year = {2019},
	pages = {1-8},
	address = {Padova, Italy},
	url = {https://www.ndt.net/article/ctc2019/papers/iCT2019_Full_paper_45.pdf},
	author = {Jonathan Sanctorum and Jan De Beenhouwer and Johannes Weissenb{\"o}ck and Christoph Heinzl and Johann Kastner and Jan Sijbers}
}
@inproceedings {1917,
	title = {Tools for the Analysis of Datasets from X-Ray Computed Tomography based on Talbot-Lau Grating Interferometry},
	booktitle = {9th Conference on Industrial Computed Tomography},
	year = {2019},
	address = {Padova, Italy},
	url = {https://www.ndt.net/article/ctc2019/papers/iCT2019_Full_paper_52.pdf},
	author = {Bernhard Fr{\"o}hler and Lucas da Cunha Melo and Johannes Weissenb{\"o}ck and Johann Kastner and Torsten M{\"o}ller and Hans-Christian Hege and Eduard Gr{\"o}ller and Jonathan Sanctorum and Jan De Beenhouwer and Jan Sijbers and Christoph Heinzl}
}
@article {1923,
	title = {A Visual Tool for the Analysis of Algorithms for Tomographic Fiber Reconstruction in Materials Science},
	journal = {Computer Graphics Forum},
	volume = {38},
	year = {2019},
	pages = {273-283},
	doi = {10.1111/cgf.13688},
	author = {Bernhard Fr{\"o}hler and Tim Elberfeld and Torsten M{\"o}ller and Johannes Weissenb{\"o}ck and Jan De Beenhouwer and Jan Sijbers and Hans-Christian Hege and Johann Kastner and Christoph Heinzl}
}
@article {1908,
	title = {Brain Tissue{\textendash}Volume Changes in Cosmonauts},
	journal = {New England Journal of Medicine},
	volume = {379},
	year = {2018},
	pages = {1678 - 1680},
	issn = {0028-4793},
	doi = {10.1056/NEJMc1809011},
	url = {http://www.nejm.org/doi/10.1056/NEJMc1809011},
	author = {Angelique Van Ombergen and Steven Jillings and Ben Jeurissen and Tomilovskaya, Elena and R{\"u}hl, Maxine and Alena Rumshiskaya and Nosikova, Inna and Liudmila Litvinova and Annen, Jitka and Ekaterina V. Pechenkova and Inessa B. Kozlovskaya and Stefan Sunaert and Paul M Parizel and Valentin Sinitsyn and Steven S L Laureys and Jan Sijbers and zu Eulenburg, Peter and Floris L Wuyts}
}
@conference {1949,
	title = {Changes in intrinsic functional brain connectivity after first-time exposure to parabolic flight},
	year = {2018},
	doi = {10.3389/conf.fphys.2018.26.00017},
	author = {Angelique Van Ombergen and Floris L Wuyts and Ben Jeurissen and Jan Sijbers and Floris Vanhevel and Steven Jillings and Paul M Parizel and Stefan Sunaert and Paul H Van de Heyning and Vincent Dousset and Steven S L Laureys and Athena Demertzi}
}
@article {1901,
	title = {Close-range hyperspectral image analysis for the early detection of plant stress responses in individual plants in a high-throughput phenotyping platform},
	journal = {ISPRS Journal of Photogrammetry and Remote Sensing },
	volume = {138},
	year = {2018},
	pages = {121-138},
	author = {Mohd Shahrimie Mohd Asaari and Puneet Mishra and Stien Mertens and Stijn Dhondt and Dirk Inze and Nathalie Wuyts and Paul Scheunders}
}
@inproceedings {1831,
	title = {Comparative Visualization of Orientation Tensors in Fiber-Reinforced Polymers},
	booktitle = {8th Conference on Industrial Computed Tomography, Wels, Austria },
	year = {2018},
	author = {Johannes Weissenb{\"o}ck and M Arikan and D Salaberger and Johann Kastner and Jan De Beenhouwer and Jan Sijbers and S Rauchenzauner and T Raab-Wernig and E Gr{\"o}ller and Christoph Heinzl}
}
@inproceedings {1898,
	title = {Detection of plant responses to drought using close-range hyperspectral imaging in a high-throughput phenotyping platform},
	booktitle = {IEEE Whispers 2018, Workshop on Hyperspectral Image and Signal Processing, Amsterdam, 23-26 September  },
	year = {2018},
	author = {Mohd Shahrimie Mohd Asaari and Stien Mertens and S Dhondt and Nathalie Wuyts and Paul Scheunders}
}
@article {1903,
	title = {A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila},
	journal = {Plos Computational Biology},
	volume = {14},
	year = {2018},
	pages = {e1006410},
	author = {G Liu and Tanmay Nath and Z Guo and G Linneweber and A Claeys and J Li and M Bengochea and Steve De Backer and Barbara Weyn and M Sneyders and H Nicasy and P Yu and Paul Scheunders and Bassem Hassan}
}
@article {1865,
	title = {A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)},
	journal = {NeuroImage},
	volume = {183},
	year = {2018},
	pages = {300-313},
	issn = {10538119},
	doi = {10.1016/j.neuroimage.2018.08.013},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1053811918307110https://api.elsevier.com/content/article/PII:S1053811918307110?httpAccept=text/xmlhttps://api.elsevier.com/content/article/PII:S1053811918307110?httpAccept=text/plain},
	author = {Washington, Stuart D. and Hamaide, Julie and Ben Jeurissen and Gwendolyn Van Steenkiste and Toon Huysmans and Jan Sijbers and Deleye, Steven and Kanwal, Jagmeet S. and De Groof, Geert and Liang, Sayuan and Johan Van Audekerke and Wenstrup, Jeffrey J. and Annemie Van Der Linden and Radtke-Schuller, Susanne and Marleen Verhoye}
}
@article {1792,
	title = {TomoBank: A Tomographic Data Repository for Computational X-ray Science},
	journal = {Measurement Science and Technology},
	volume = {29},
	year = {2018},
	pages = {1-10},
	doi = {https://doi.org/10.1088/1361-6501/aa9c19},
	author = {Francesco De Carlo and Doga Gursoy and Daniel Ching and Kees Joost Batenburg and Ludwig, Wolfgang and Lucia Mancini and Federica Marone Welford and Rajmund Mokso and Daan Pelt and Jan Sijbers and Mark Rivers}
}
@article {1752,
	title = {Altered functional brain connectivity in patients with visually induced dizziness},
	journal = {NeuroImage: Clinical},
	volume = {14},
	year = {2017},
	pages = {538{\textendash}545},
	doi = {http://dx.doi.org/10.1016/j.nicl.2017.02.020},
	author = {Angelique Van Ombergen and Lizette Heine and Steven Jillings and Edward Roberts and Ben Jeurissen and V. Van Rompaey and Viviana Mucci and Stefanie Vanhecke and Jan Sijbers and Floris Vanhevel and Stefan Sunaert and Mohamed Ali Bahri and Paul M Parizel and Paul H Van de Heyning and Steven S L Laureys and Floris L Wuyts}
}
@article {1756,
	title = {The effect of spaceflight and microgravity on the human brain},
	journal = {Journal of Neurology},
	volume = {246},
	year = {2017},
	pages = {18-22},
	doi = {10.1007/s00415-017-8427-x},
	author = {Angelique Van Ombergen and Athena Demertzi and Elena Tomilovskaya and Ben Jeurissen and Jan Sijbers and Inessa B. Kozlovskaya and Paul M Parizel and Paul H Van de Heyning and Stefan Sunaert and Steven S L Laureys and Floris L Wuyts}
}
@article {1762,
	title = {Intrinsic connectivity reduces in vestibular-related regions after first-time exposure to short-term gravitational alterations},
	journal = {Scientific Reports},
	volume = {7},
	year = {2017},
	doi = {10.1038/s41598-017-03170-5},
	author = {Angelique Van Ombergen and Floris L Wuyts and Ben Jeurissen and Jan Sijbers and Floris Vanhevel and Steven Jillings and Paul M Parizel and Stefan Sunaert and Paul H Van de Heyning and Vincent Dousset and Steven S L Laureys and Athena Demertzi}
}
@inproceedings {1755,
	title = {A Novel adaptive PCA Based Denoising Technique for Ultra-High-Rate Computed Tomography},
	booktitle = {7th Conference on Industrial Computed Tomography (iCT 2017)},
	year = {2017},
	month = {02/2017},
	publisher = {ndt.net},
	organization = {ndt.net},
	address = {Leuven (Belgium)},
	abstract = {Increasing the X-ray tomography acquisition rate is of high importance especially in medical applications as well as dynamic processes investigation. Thanks to the high brilliance of synchrotron radiation, it is possible to reduce the exposure time and do a tomographic scan with a sub-second temporal resolution which allows following dynamic processes in 4D (3D space + time).
On the other hand, increasing the acquisition rate leads to more background noise which strictly limits the advantages of high rate scan. We apply a new fast denoising technique using universal properties of eigen-spectrum of random covariance matrices. Our proposed technique is established based on the principal component analysis (PCA) of redundant data which shows that most of the signal-related variance is contained in a few components, whereas the noise is spread over all components. Extensive numerical evaluations of the proposed technique on a real dataset were acquired at the TOMCAT beamline with its ultra-fast endstation, show significant improvement in the quality of reconstructed images and elimination of noise.},
	keywords = {denoising, eigenvalue, principal component analysis (PCA), ultra-fast scan},
	author = {Karim Zarei Zefreh and Federica Marone Welford and Jan Sijbers},
	editor = {Mehrdad Taki}
}
@article {1683,
	title = {Chronic exposure to haloperidol and olanzapine leads to common and divergent shape changes in the rat hippocampus in the absence of grey-matter volume loss},
	journal = {Psychological Medicine},
	volume = {46},
	year = {2016},
	pages = {3081-3093},
	doi = {10.1017/S0033291716001768},
	author = {William R Crum and Femke Danckaers and Toon Huysmans and Marie-Caroline Cotel and Sridhar Natesan and Michel M. Modo and Jan Sijbers and Steven C.R. Williams and Shitij Kapur and Anthony C. Vernon}
}
@inproceedings {1737,
	title = {Close range hyperspectral imaging for plant phenotyping},
	booktitle = {Hyperspectral Imaging and Applications Conference},
	year = {2016},
	month = {October/2016},
	address = {Coventry, UK},
	author = {Puneet Mishra and Mohd Shahrimie Mohd Asaari and Stien Mertens and Nathalie Wuyts and Stijn Dhondt and Paul Scheunders}
}
@article {1584,
	title = {Cortical reorganization in an astronaut{\textquoteright}s brain after long-duration spaceflight},
	journal = {Brain Structure and Function},
	volume = {221},
	year = {2016},
	pages = {2873{\textendash}2876},
	doi = {10.1007/s00429-015-1054-3},
	author = {Athena Demertzi and Angelique Van Ombergen and Elena Tomilovskaya and Ben Jeurissen and Ekaterina V. Pechenkova and Carol Di Perri and Liudmila Litvinova and Enrico Amico and Alena Rumshiskaya and Ilya Rukavishnikov and Jan Sijbers and Valentin Sinitsyn and Inessa B. Kozlovskaya and Stefan Sunaert and Paul M Parizel and Paul H Van de Heyning and Steven S L Laureys and Floris L Wuyts}
}
@inproceedings {1667,
	title = {Investigation on Effect of scintillator thickness on Afterglow in Indirect X-ray Detectors},
	booktitle = {6th Conference on Industrial Computed Tomography, Wels, Austria (iCT 2016)},
	year = {2016},
	abstract = {Solid-state scintillation detectors are widely used in modern multi-slice CT systems as well as synchrotron micro-tomography beamlines. Amongst other parameters, the performance of these detectors depends on the thickness of the scintillator. Thicker scintillators result in higher emission intensities, yet the resolution deteriorates as the thickness increases. To achieve a higher scan speed, thicker scintillators are more common. The thickness of scintillators however may influence the afterglow.  In this paper, we investigate the effect of scintillator thickness on the afterglow, using scintillating screens of two different materials (LAG:Ce and Gadox) and different thicknesses.  
Experimental results show that, apart from the scintillator material and excitation condition, the thickness of scintillator has a decisive role on the scintillator decay and particularly on the afterglow.
},
	keywords = {afterglow, flat-panel, image lag, scintillator thickness, synchrotron, x-ray detector},
	url = {http://www.ndt.net/article/ctc2016/papers/ICT2016_paper_id74.pdf},
	author = {Karim Zarei Zefreh and Jan De Beenhouwer and Federica Marone Welford and Jan Sijbers}
}
@inproceedings {1719,
	title = {Investigation on the effect of exposure time on scintillator afterglow for ultra-fast tomography acquisition},
	booktitle = {18th International Workshop on Radiation Imaging Detectors},
	volume = {11},
	year = {2016},
	pages = {C12014},
	publisher = {IOP Publishing},
	organization = {IOP Publishing},
	address = {Barcelona, Spain},
	doi = {10.1088/1748-0221/11/12/C12014},
	author = {Karim Zarei Zefreh and Federica Marone Welford and Jan Sijbers}
}
@article {1748,
	title = {Investigation on the effect of exposure time on scintillator afterglow for ultra-fast tomography acquisition},
	journal = {Journal of Instrumentation},
	volume = {11},
	year = {2016},
	month = {12/2016},
	abstract = {Thanks to the ultra-fast endstation of the TOMCAT beamline, it is possible to do a tomographic scan with a sub-second temporal resolution which allows following dynamic processes in 4D (3D space + time). This ultra- high-rate tomography acquisition, exploiting the distinctive peculiarities of synchrotron radiation, provides nondestructive investigation of many dynamic processes which were not possible in the past. For example a continuous tensile test has been conducted recently in-situ for the first time with a frequency of 20 tomograms per second (20 Hz acquisition frequency). In the ultra-fast endstation a scintillator is used to convert X-ray to visible photons that can be detected by the camera. However, this conversion is not ideal and the scintillator response decays exponentially with afterglow. Afterglow can cause resolution degradation and artifacts (such as ring and band) especially with high rotation speed. On the other hand, to achieve a higher scan speed, thicker scintillators are more common because they result in higher emission intensities that can compensate the short exposure time in fast scans. However, the resolution deteriorates as the scintillator{\textquoteright}s thickness increases and thicker scintillators show higher afterglow. Performing many ultra-fast scans at the TOMCAT beamline with different acquisition rate, we demonstrate how the exposure time effects on the projection data and reconstructed images. Using two different thicknesses of LAG scintillator we also investigate the afterglow artifacts for different acquisition rate and exposure time.},
	keywords = {4DCT, computed tomography, exposure time, scintillator},
	doi = {10.1088/1748-0221/11/12/C12014},
	url = {http://iopscience.iop.org/article/10.1088/1748-0221/11/12/C12014/meta;jsessionid=DE490396BDCED3C5746F4059065713A1.c3.iopscience.cld.iop.org},
	author = {Karim Zarei Zefreh},
	editor = {Federica Marone Welford}
}
@inproceedings {1736,
	title = {Modeling effects of illumination and plant geometry on leaf reflectance spectra in close-range hyperspectral imaging},
	booktitle = {8th WHISPERS - Evolution in Remote Sensing},
	year = {2016},
	month = {August/2016},
	publisher = {IEEE},
	organization = {IEEE},
	address = {Los Angeles, USA},
	author = {Mohd Shahrimie Mohd Asaari and Puneet Mishra and Stien Mertens and Stijn Dhondt and Nathalie Wuyts and Paul Scheunders}
}
@article {1674,
	title = {Quantitative 3D analysis of huge nanoparticle assemblies.},
	journal = {Nanoscale},
	volume = {8},
	year = {2016},
	month = {2016 Jan 7},
	pages = {292-9},
	abstract = {Nanoparticle assemblies can be investigated in 3 dimensions using electron tomography. However, it is not straightforward to obtain quantitative information such as the number of particles or their relative position. This becomes particularly difficult when the number of particles increases. We propose a novel approach in which prior information on the shape of the individual particles is exploited. It improves the quality of the reconstruction of these complex assemblies significantly. Moreover, this quantitative Sparse Sphere Reconstruction approach yields directly the number of particles and their position as an output of the reconstruction technique, enabling a detailed 3D analysis of assemblies with as many as 10,000 particles. The approach can also be used to reconstruct objects based on a very limited number of projections, which opens up possibilities to investigate beam sensitive assemblies where previous reconstructions with the available electron tomography techniques failed.},
	issn = {2040-3372},
	doi = {10.1039/c5nr06962a},
	author = {Daniele Zanaga and Folkert Bleichrodt and Thomas Altantzis and Winckelmans, Naomi and Willem Jan Palenstijn and Jan Sijbers and de Nijs, Bart and Marijn A van Huis and Ana S{\'a}nchez-Iglesias and Luis M Liz-Marzán and van Blaaderen, Alfons and Kees Joost Batenburg and Sara Bals and Van Tendeloo, Gustaaf}
}
@conference {1765,
	title = {Understanding microstructural deformation of apple tissue from 4D micro-CT imaging},
	year = {2016},
	doi = {10.17660/ActaHortic.2018.1197.2},
	author = {Wang, Z and Seppe Rogge and Mattias Van Dael and Vincent Van Nieuwenhove and Pieter Verboven and Jan Sijbers and Bart Nicolai}
}
@article {1570,
	title = {4D-CT reconstruction with unified spatial-temporal patch-based regularization},
	journal = { Inverse Problems and Imaging},
	volume = {9},
	year = {2015},
	pages = {447-467},
	doi = {10.3934/ipi.2015.9.447},
	author = {Kazantsev, Daniil and Thompson, William M. and Lionheart, William R. B. and Van Eyndhoven, Geert and Kaestner,  Anders P. and Katherine J Dobson and Withers, Philip J. and Lee, Peter D.}
}
@article {1604,
	title = {Diffusion Kurtosis Imaging: a possible MRI biomarker for AD diagnosis?},
	journal = {Journal of Alzheimer{\textquoteright}s Disease},
	volume = {48},
	number = {4},
	year = {2015},
	pages = {937-948},
	doi = {10.3233/JAD-150253},
	author = {Hanna Struyfs and Wim Van Hecke and Jelle Veraart and Jan Sijbers and Sylvie Slaets and Maya De Belder and Laura Wuyts and Benjamin Peters and Kristel Sleegers and Caroline Robberecht and Van Broeckhoven, Christine and Frank De Belder and Paul M Parizel and Sebastiaan Engelborghs}
}
@article {1579,
	title = {Employing temporal self-similarity across the entire time domain in computed tomography reconstruction},
	journal = {Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
	volume = {373},
	number = {2043},
	year = {2015},
	publisher = {The Royal Society},
	abstract = {There are many cases where one needs to limit the X-ray dose, or the number of projections, or both, for high frame rate (fast) imaging. Normally, it improves temporal resolution but reduces the spatial resolution of the reconstructed data. Fortunately, the redundancy of information in the temporal domain can be employed to improve spatial resolution. In this paper, we propose a novel regularizer for iterative reconstruction of time-lapse computed tomography. The non-local penalty term is driven by the available prior information and employs all available temporal data to improve the spatial resolution of each individual time frame. A high-resolution prior image from the same or a different imaging modality is used to enhance edges which remain stationary throughout the acquisition time while dynamic features tend to be regularized spatially. Effective computational performance together with robust improvement in spatial and temporal resolution makes the proposed method a competitive tool to state-of-the-art techniques.},
	isbn = {1471-2962},
	issn = {1364-503X},
	doi = {10.1098/rsta.2014.0389},
	author = {Kazantsev, Daniil and Van Eyndhoven, Geert and Lionheart, William R. B. and Withers, Philip J. and Katherine J Dobson and McDonald, S. A. and Atwood, R and Lee, Peter D.}
}
@conference {Van_Ombergen2015-nk,
	title = {A first insight in regional brain changes after parabolic flight: a voxel-based morphometry study},
	year = {2015},
	pages = {1258},
	author = {Angelique Van Ombergen and Ben Jeurissen and Floris Vanhevel and Loeckx, Dirk and Dousset, Vincent and Paul M Parizel and Floris L Wuyts}
}
@article {1626,
	title = {Quantitative 3D analysis of huge nanoparticle assemblies},
	journal = {Nanoscale},
	volume = {8},
	year = {2015},
	pages = {292-299},
	doi = {10.1039/C5NR06962A},
	author = {Daniele Zanaga and Folkert Bleichrodt and Thomas Altantzis and Winckelmans, Naomi and Willem Jan Palenstijn and Jan Sijbers and B. van Nijs and Marijn A van Huis and van Blaaderen, Alfons and Ana S{\'a}nchez-Iglesias and Luis M Liz-Marzán and Kees Joost Batenburg and Sara Bals and Van Tendeloo, Gustaaf}
}
@inproceedings {1533,
	title = {Automated Social behaviour Recognition At Low Resolution},
	booktitle = {ICPR14, International Conference on Pattern Recognition, Stockholm, Sweden},
	year = {2014},
	author = {Tanmay, Nath and G. Liu and Bassem Hassan and Barbara Weyn and Steve De Backer and Paul Scheunders}
}
@inproceedings {1453,
	title = {Automated Social behaviour Recognition At Low Resolution},
	booktitle = {22nd IEEE - International Conference of Pattern Recognition (ICPR)},
	year = {2014},
	author = {Tanmay Nath and G.Liu and Barbara Weyn and Bassem Hassan and Steve De Backer and Paul Scheunders}
}
@conference {1486,
	title = {Influence of Correspondence Method on Statistical Model Based Shape Prediction},
	year = {2014},
	author = {Christophe Van Dijck and Wirix-Speetjens, Roel and Toon Huysmans and Femke Danckaers and Jan Sijbers and Vander Sloten, Jos}
}
@inproceedings {1485,
	title = {Influence of Correspondence Method on Statistical Model Based Shape Prediction},
	booktitle = {IEEE International Symposium on Biomedical Imaging (ISBI)},
	year = {2014},
	author = {Christophe Van Dijck and Wirix-Speetjens, Roel and Toon Huysmans and Femke Danckaers and Jan Sijbers and Vander Sloten, Jos}
}
@article {1413,
	title = {Reelin Associated With Restricted and Stereotyped Behavior Based on Principal Component Analysis on Autism Diagnostic Interview-Revised},
	journal = {Autism - Open Access},
	volume = {3},
	year = {2013},
	chapter = {107},
	url = {http://www.omicsgroup.org/journals/2165-7890/2165-7890-3-107.pdf},
	author = {Roine, Ulrika and Ripatti, Samuli and Rehnstr{\"o}m, Karola and Timo Roine and Kilpinen, Helena and Surakka, Ida and Wedenoja, Juho and Ylisaukko-oja, Tero and Kempas, Elli and Wessman, Jaana and Moilanen, Irma and Mattila, Marja-Leena and Kielinen, Marko and Jussila, Katja and Suomalainen, Saara and Pulkkinen, Esko and von Wendt, Lennart and Peltonen, Leena}
}
@article {1431,
	title = {Statistical shape modeling and population analysis of the aortic root of TAVI patients},
	journal = {Journal of Medical Devices},
	volume = {7},
	year = {2013},
	month = {12/2013},
	publisher = {ASME},
	edition = {040925 },
	abstract = {The new transcatheter technique to implant synthetic aortic valves offers a treatment to patients previously considered untreatable. However the majority of patients suffer from leakage alongside the implant. Using a statistical shape model of the anatomy a correlation was discovered between leakage and the shape of the sinuses of valsalva.},
	doi = {10.1115/1.4025904},
	url = {http://medicaldevices.asmedigitalcollection.asme.org/article.aspx?articleid=1767192},
	author = {Bosmans, Bart and Toon Huysmans and Wirix-Speetjens, Roel and Verschueren, Peter and Jan Sijbers and Bosmans, Johan and Vander Sloten, Jos}
}
@article {1396,
	title = {Subchronic memantine induced concurrent functional disconnectivity and altered ultra-structural tissue integrity in the rodent brain: revealed by multimodal MRI.},
	journal = {Psychopharmacology},
	volume = {227},
	year = {2013},
	month = {2013 Jun},
	pages = {479-91},
	abstract = {BACKGROUND: An effective NMDA antagonist imaging model may find key utility in advancing schizophrenia drug discovery research. We investigated effects of subchronic treatment with the NMDA antagonist memantine by using behavioural observation and multimodal MRI.

METHODS: Pharmacological MRI (phMRI) was used to map the neuroanatomical binding sites of memantine after acute and subchronic treatment. Resting state fMRI (rs-fMRI) and diffusion MRI were used to study the changes in functional connectivity (FC) and ultra-structural tissue integrity before and after subchronic memantine treatment. Further corroborating behavioural evidences were documented.

RESULTS: Dose-dependent phMRI activation was observed in the prelimbic cortex following acute doses of memantine. Subchronic treatment revealed significant effects in the hippocampus, cingulate, prelimbic and retrosplenial cortices. Decreases in FC amongst the hippocampal and frontal cortical structures (prelimbic, cingulate) were apparent through rs-fMRI investigation, indicating a loss of connectivity. Diffusion kurtosis MRI showed decreases in fractional anisotropy and mean diffusivity changes, suggesting ultra-structural changes in the hippocampus and cingulate cortex. Limited behavioural assessment suggested that memantine induced behavioural effects comparable to other NMDA antagonists as measured by locomotor hyperactivity and that the effects could be reversed by antipsychotic drugs.

CONCLUSION: Our findings substantiate the hypothesis that repeated NMDA receptor blockade with nonspecific, noncompetitive NMDA antagonists may lead to functional and ultra-structural alterations, particularly in the hippocampus and cingulate cortex. These changes may underlie the behavioural effects. Furthermore, the present findings underscore the utility and the translational potential of multimodal MR imaging and acute/subchronic memantine model in the search for novel disease-modifying treatments for schizophrenia.},
	issn = {1432-2072},
	doi = {10.1007/s00213-013-2966-3},
	author = {Sekar, S and Jonckers, E and Marleen Verhoye and Willems, R and Jelle Veraart and Johan Van Audekerke and Couto, J and Giugliano, M and Wuyts, K and Dedeurwaerdere, S and Jan Sijbers and Mackie, C and Ver Donck, L and Steckler, T and Annemie Van Der Linden}
}
@inproceedings {tanmay2013tracking,
	title = {Tracking for Quantifying Social Network of Drosophila Melanogaster},
	booktitle = {15th Computer Analysis of Images and Patterns (CAIP)},
	volume = {8048},
	year = {2013},
	pages = {539{\textendash}545},
	publisher = {Springer},
	organization = {Springer},
	author = {Tanmay Nath and Liu, Guangda and Barbara Weyn and Bassem Hassan and Steve De Backer and Paul Scheunders}
}
@article {1515,
	title = {Extraction of airways from CT (EXACT{\textquoteright}09).},
	journal = {IEEE Transactions on Medical Imaging},
	volume = {31},
	year = {2012},
	month = {2012 Nov},
	pages = {2093-107},
	abstract = {This paper describes a framework for establishing a reference airway tree segmentation, which was used to quantitatively evaluate fifteen different airway tree extraction algorithms in a standardized manner. Because of the sheer difficulty involved in manually constructing a complete reference standard from scratch, we propose to construct the reference using results from all algorithms that are to be evaluated. We start by subdividing each segmented airway tree into its individual branch segments. Each branch segment is then visually scored by trained observers to determine whether or not it is a correctly segmented part of the airway tree. Finally, the reference airway trees are constructed by taking the union of all correctly extracted branch segments. Fifteen airway tree extraction algorithms from different research groups are evaluated on a diverse set of twenty chest computed tomography (CT) scans of subjects ranging from healthy volunteers to patients with severe pathologies, scanned at different sites, with different CT scanner brands, models, and scanning protocols. Three performance measures covering different aspects of segmentation quality were computed for all participating algorithms. Results from the evaluation showed that no single algorithm could extract more than an average of 74\% of the total length of all branches in the reference standard, indicating substantial differences between the algorithms. A fusion scheme that obtained superior results is presented, demonstrating that there is complementary information provided by the different algorithms and there is still room for further improvements in airway segmentation algorithms.},
	keywords = {Algorithms, Analysis of Variance, Databases, Factual, Humans, Lung, Radiographic Image Enhancement, Tomography, X-Ray Computed, Trachea},
	issn = {1558-254X},
	doi = {10.1109/TMI.2012.2209674},
	author = {Lo, Pechin and van Ginneken, Bram and Reinhardt, Joseph M and Yavarna, Tarunashree and de Jong, Pim A and Irving, Benjamin and Fetita, Catalin and Ortner, Margarete and R{\^o}mulo Pinho and Jan Sijbers and Feuerstein, Marco and Fabija{\'n}ska, Anna and Bauer, Christian and Beichel, Reinhard and Mendoza, Carlos S and Wiemker, Rafael and Lee, Jaesung and Reeves, Anthony P and Born, Silvia and Weinheimer, Oliver and van Rikxoort, Eva M and Tschirren, Juerg and Mori, Ken and Odry, Benjamin and Naidich, David P and Hartmann, Ieneke and Eric A. Hoffman and Prokop, Mathias and Pedersen, Jesper H and de Bruijne, Marleen}
}
@article {1516,
	title = {Improved sensitivity to cerebral white matter abnormalities in Alzheimer{\textquoteright}s disease with spherical deconvolution based tractography.},
	journal = {PloS one},
	volume = {7},
	year = {2012},
	month = {2012},
	pages = {e44074},
	abstract = {Diffusion tensor imaging (DTI) based fiber tractography (FT) is the most popular approach for investigating white matter tracts in vivo, despite its inability to reconstruct fiber pathways in regions with "crossing fibers." Recently, constrained spherical deconvolution (CSD) has been developed to mitigate the adverse effects of "crossing fibers" on DTI based FT. Notwithstanding the methodological benefit, the clinical relevance of CSD based FT for the assessment of white matter abnormalities remains unclear. In this work, we evaluated the applicability of a hybrid framework, in which CSD based FT is combined with conventional DTI metrics to assess white matter abnormalities in 25 patients with early Alzheimer{\textquoteright}s disease. Both CSD and DTI based FT were used to reconstruct two white matter tracts: one with regions of "crossing fibers," i.e., the superior longitudinal fasciculus (SLF) and one which contains only one fiber orientation, i.e. the midsagittal section of the corpus callosum (CC). The DTI metrics, fractional anisotropy (FA) and mean diffusivity (MD), obtained from these tracts were related to memory function. Our results show that in the tract with "crossing fibers" the relation between FA/MD and memory was stronger with CSD than with DTI based FT. By contrast, in the fiber bundle where one fiber population predominates, the relation between FA/MD and memory was comparable between both tractography methods. Importantly, these associations were most pronounced after adjustment for the planar diffusion coefficient, a measure reflecting the degree of fiber organization complexity. These findings indicate that compared to conventionally applied DTI based FT, CSD based FT combined with DTI metrics can increase the sensitivity to detect functionally significant white matter abnormalities in tracts with complex white matter architecture.},
	keywords = {Aged, 80 and over, Alzheimer Disease, Cerebrum, Cognition, Corpus Callosum, diffusion tensor imaging, Female, Humans, Male, Memory, Nerve Fibers, Myelinated},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0044074},
	author = {Reijmer, Yael D and Alexander Leemans and Heringa, Sophie M and Wielaard, Ilse and Ben Jeurissen and Koek, Huiberdina L and Biessels, Geert Jan}
}
@article {1393,
	title = {Through the Looking-Glass, and What the Quadratic Camera Found There},
	journal = {The Mathematical Intelligencer},
	volume = {34},
	year = {2012},
	month = {9/2012},
	pages = {30 - 34},
	issn = {0343-6993},
	doi = {10.1007/s00283-012-9309-9},
	author = {de Smit, Bart and McClure, Mark and Willem Jan Palenstijn and Sparling, E. Isaac and Wagon, Stan}
}
@conference {1551,
	title = {Constrained spherical deconvolution based tractography and cognition in Alzheimer{\textquoteright}s disease},
	year = {2011},
	address = {Qu{\'e}bec, Canada},
	author = {Reijmer, Yael D and Alexander Leemans and Heringa, Sophie M and Wielaard, Ilse and Ben Jeurissen and Koek, Huiberdina L and Biessels, Geert Jan}
}
@conference {1552,
	title = {Constrained spherical deconvolution based tractography and cognition in Alzheimer{\textquoteright}s disease},
	year = {2011},
	address = {Paris, France},
	author = {Reijmer, Yael D and Alexander Leemans and Heringa, Sophie M and Wielaard, Ilse and Ben Jeurissen and Koek, Huiberdina L and Biessels, Geert Jan}
}
@conference {1549,
	title = {Constrained spherical deconvolution based tractography and cognition in Alzheimer{\textquoteright}s disease},
	volume = {5},
	year = {2011},
	address = {Lille, France},
	author = {Reijmer, Yael D and Alexander Leemans and Heringa, Sophie M and Wielaard, Ilse and Ben Jeurissen and Koek, Huiberdina L and Biessels, Geert Jan}
}
@conference {1550,
	title = {Diffusion tensor imaging and cognition in Alzheimer{\textquoteright}s disease: the influence of crossing fibers},
	year = {2011},
	address = {Lunteren, The Netherlands},
	author = {Wielaard, Ilse and Reijmer, Yael D and Alexander Leemans and Heringa, Sophie M and Ben Jeurissen and Koek, Huiberdina L and Biessels, Geert Jan}
}
@article {R.AdriaanKimmverhoyedpootJoukeJ.HjsijbersOavdlinde2011,
	title = {Magnetic resonance imaging and spectroscopy reveal differential hippocampal changes in anhedonic and resilient subtypes of the chronic mild stress rat model},
	journal = {Biological psychiatry},
	volume = {70},
	number = {5},
	year = {2011},
	pages = {449-457},
	author = {Rafael  Delgado Y Palacios and Campo Adriaan and Henningsen Kim and Marleen Verhoye and Dirk H J Poot and Dijkstra Jouke and Johan Van Audekerke and H Benveniste and Jan Sijbers and O. Wiborg and Annemie Van Der Linden}
}
@article {1268,
	title = {X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement of coated particles},
	journal = {Advanced Powder Technology},
	volume = {21},
	year = {2010},
	month = {11/2010},
	pages = {663 - 675},
	issn = {09218831},
	doi = {10.1016/j.apt.2010.08.002},
	author = {Perfetti, Giacomo and Elke Van de Casteele and Rieger, Bernd and Wildeboer, Willem J. and Meesters, Gabrie M.H.}
}
@conference {PalaciosmverhoyeAudekerkedpootjsijbersWiborgavdlinde2009,
	title = {DKI visualizes hippocampal alterations in the chronic mild stress ratmodel},
	volume = {2009},
	year = {2009},
	month = {April},
	pages = {744},
	author = {Rafael  Delgado Y Palacios and Marleen Verhoye and Johan Van Audekerke and Dirk H J Poot and Jan Sijbers and O. Wiborg and Annemie Van Der Linden}
}
@inproceedings {svdmaarjbatenbujsijbers2009,
	title = {Experiences with Cell-BE and GPU for tomography},
	booktitle = {Embedded COmputer Systems: Architectures, Modeling, and Simulation - 9th International Workshop, SAMOS 2009 - Proceedings},
	year = {2009},
	month = {July},
	pages = {298-307},
	publisher = {Springer-Verlag Berlin Heidelberg},
	organization = {Springer-Verlag Berlin Heidelberg},
	author = {S. van der Maar and Kees Joost Batenburg and Jan Sijbers},
	editor = {Koen Bertels and Stephan Wong}
}
@inproceedings {aleemanswvheckeLebelWalkerjsijbersBeaulieu2007,
	title = {A model based approach for voxelwise analysis of multi-subject diffusion tensor data},
	booktitle = {Joint Annual Meeting ISMRM-ESMRMB},
	year = {2007},
	address = {Berlin},
	author = {Alexander Leemans and Wim Van Hecke and C. Lebel and L. Walker and Jan Sijbers and C. Beaulieu}
}
@inproceedings {jjuntujsijbersdvandyckGielen2005,
	title = {Bias Field Correction for MRI Images},
	booktitle = {Proceedings of the 4th International Conference on Computer Recognition Systems (CORES05)},
	series = {Advances in Computer Science},
	year = {2005},
	month = {May},
	pages = {543-551},
	publisher = {Springer},
	organization = {Springer},
	address = {Rydzyna Castle, Poland},
	author = {Juntu, Jaber and Jan Sijbers and Dirk Van Dyck and Jan L Gielen},
	editor = {Marek Kurzynsji and Edward Puchala and Michal Wozniak and Andrzej Zolnierek}
}
@inproceedings {ajdendekjsijbers2004,
	title = {Detection of brain activation from magnitude fMRI data using a generalized likelihood ratio test},
	booktitle = {Proceedings of the 12th European Signal Processing Conference},
	year = {2004},
	month = {September},
	pages = {233-236},
	publisher = {ISBN 3-200-00165-8},
	organization = {ISBN 3-200-00165-8},
	address = {Vienna, Austria},
	author = {Arnold Jan den Dekker and Jan Sijbers},
	editor = {F. Hlawatsch and B. Wistawel}
}
@inproceedings {WaarsingaleemansDayEderveendvandyckBuelensClerckSasovWeinans2003,
	title = {Effects of Growth and OVX in the Tibia of Individual Rats: an in-vivo Micro-CT Study},
	booktitle = {49th Annual Meeting - Orthopaedic Research Society},
	year = {2003},
	address = {New Orleans, LA, USA},
	author = {J. H. Waarsing and Alexander Leemans and J. Day and A. G. H. Ederveen and Dirk Van Dyck and E. Buelens and N. De Clerck and A. Sasov and H. Weinans}
}
@article {gvdwouweWeynpscheundJacobMarckdvandyck2000,
	title = {Automated chromatin-texture based diagnosis of carcinoma nuclei},
	journal = {Journal of Microscopy},
	volume = {197},
	year = {2000},
	pages = {25-35},
	author = {G. Van de Wouwer and Barbara Weyn and Paul Scheunders and W. Jacob and E. Van Marck and Dirk Van Dyck}
}
@article {WeynTjalamgvdwouweDaelepscheundJacobMarckdvandyck2000,
	title = {Validation of nuclear texture density, morphometry and tissue syntactic structure analysis as prognosticators of cervical carcinoma},
	journal = {Analytical and Quantitative Cytology and Histology},
	volume = {22},
	number = {5},
	year = {2000},
	pages = {373-382},
	author = {Barbara Weyn and W. Tjalam and G. Van de Wouwer and A. Van Daele and Paul Scheunders and W. Jacob and E. Van Marck and Dirk Van Dyck}
}
@article {WeyngvdwouweSamirDaelepscheundMarckJacob1999,
	title = {Computer-assisted differential diagnosis of malignant mesothelioma based on syntactic structure analysis},
	journal = {Cytometry},
	volume = {35},
	year = {1999},
	pages = {23-29},
	author = {Barbara Weyn and G. Van de Wouwer and G.K. Samir and A. Van Daele and Paul Scheunders and E. Van Marck and W. Jacob}
}
@inproceedings {mverhoyejsijbersFransenKooySorianoWillemsavdlinde1999,
	title = {In vivo neuro MRI microscopy of L1 knockout mice demonstrated similarities with human crash syndrome},
	booktitle = {Belgian Society for Neuroscience},
	year = {1999},
	month = {May},
	address = {Brussels},
	author = {Marleen Verhoye and Jan Sijbers and Erik Fransen and R.F. Kooy and P. Soriano and P. J. Willems and Annemie Van Der Linden}
}
@article {KooyReyniersmverhoyejsijbersCrasOostraWillemsavdlinde1999,
	title = {Neuroanatomy of the fragile X knockout mouse brain studied using in vivo high resolution Magnetic Resonance Imaging (MRI)},
	journal = {European Journal of Human Genetics},
	volume = {7},
	year = {1999},
	pages = {526-532},
	author = {R.F. Kooy and E. Reyniers and Marleen Verhoye and Jan Sijbers and P. Cras and B. A. Oostra and P. J. Willems and Annemie Van Der Linden}
}
@article {WeyngvdwouweKoprowskiDaeleDhaenepscheundJacobMarck1999,
	title = {Value of morphometry, texture analysis, densitometry and histometry in the differential diagnosis and prognosis of malignant mesothelioma},
	journal = {Journal of Pathology},
	volume = {4},
	number = {189},
	year = {1999},
	pages = {581-589},
	author = {Barbara Weyn and G. Van de Wouwer and M. Koprowski and A. Van Daele and K. Dhaene and Paul Scheunders and W. Jacob and E. Van Marck}
}
@article {WeyngvdwouweDaelepscheunddvandyckMarckJacob1998,
	title = {Automated breast tumour diagnosis and grading based on wavelet chromatin texture description},
	journal = {Cytometry},
	volume = {33},
	year = {1998},
	pages = {32-40},
	author = {Barbara Weyn and G. Van de Wouwer and A. Van Daele and Paul Scheunders and Dirk Van Dyck and E. Van Marck and W. Jacob}
}
@article {Wolfpscheund1998,
	title = {Evaluation of the swimming activity of Daphnia magna by image analysis after administration of sublethal Cadmium concentrations},
	journal = {Comparative Biochemistry and Physiology A},
	volume = {120},
	year = {1998},
	pages = {99-105},
	author = {G. Wolf and Paul Scheunders}
}
@inproceedings {mverhoyejsijbersKooyReyniersFransenOostraWillemsavdlinde1998,
	title = {In vivo assessment of cerebellum volume in transgenic Fragile X Knockout mice using MRI microscopy at 7T},
	booktitle = {Proceedings of the International Society for Magnetic Resonance in Medicine},
	year = {1998},
	month = {April},
	address = {Sydney, Australia},
	author = {Marleen Verhoye and Jan Sijbers and R.F. Kooy and E. Reyniers and Erik Fransen and B. A. Oostra and P. J. Willems and Annemie Van Der Linden}
}
@inproceedings {mverhoyejsijbersFransenKooySorianoWillemsavdlinde1998,
	title = {In vivo neuro MRI micrsocopy of L1 Knockout mice demonstrated similarities with human CRASH syndrome},
	booktitle = {Sixth Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine},
	number = {1371},
	year = {1998},
	month = {April},
	address = {Sydney, Australia},
	author = {Marleen Verhoye and Jan Sijbers and Erik Fransen and R.F. Kooy and P. Soriano and P. J. Willems and Annemie Van Der Linden}
}
@article {FransenDhoogheCampmverhoyejsijbersReyniersSorianoKamiguchiWillemsenKoekoekZeeuwDeynavdlindeLemmonKooyWillems1998,
	title = {L1 knockout mice show dilated ventricles, vermis hypoplasia and impaired exploration patterns},
	journal = {Human Molecular Genetics},
	volume = {7},
	number = {6},
	year = {1998},
	pages = {999-1009},
	doi = {10.1093/hmg/7.6.999},
	author = {Erik Fransen and R. Dhooghe and G. Van Camp and Marleen Verhoye and Jan Sijbers and E. Reyniers and P. Soriano and H. Kamiguchi and R. Willemsen and K.E. Koekoek and C.I. De Zeeuw and P.P. De Deyn and Annemie Van Der Linden and V. Lemmon and R.F. Kooy and P. J. Willems}
}
@inproceedings {mverhoyejsijbersKooyReyniersFransenOostraWillemsavdlinde1998,
	title = {MRI as a tool to study brain structure from mouse models of mental retardation},
	booktitle = {Proceedings of SPIE Medical Imaging},
	volume = {3337},
	year = {1998},
	month = {February},
	pages = {314-320},
	address = {San Diego, CA, USA},
	author = {Marleen Verhoye and Jan Sijbers and R.F. Kooy and E. Reyniers and Erik Fransen and B. A. Oostra and P. J. Willems and Annemie Van Der Linden},
	editor = {Eric A. Hoffman}
}
@inproceedings {KooyReyniersmverhoyejsijbersOostraWillemsavdlinde1998,
	title = {Neuroanatomy of the fragile X knockout mouse brain studied using high-resolution MRI},
	booktitle = {48th Annual Meeting of the American Society of Human Genetics},
	year = {1998},
	month = {October},
	pages = {1918},
	address = {Denver, CO (USA)},
	author = {R.F. Kooy and E. Reyniers and Marleen Verhoye and Jan Sijbers and B. A. Oostra and P. J. Willems and Annemie Van Der Linden}
}
@inproceedings {KooyReyniersDHoogheDeynavdlindemverhoyejsijbersOostraWillems1997,
	title = {Characterization of the Fragile X knockout mouse},
	booktitle = {Abstracts of the second annual meeting of the Belgian society of neuroscience},
	year = {1997},
	month = {May},
	address = {Brussels, Belgium},
	author = {R.F. Kooy and E. Reyniers and R. Dhooghe and P.P. De Deyn and Annemie Van Der Linden and Marleen Verhoye and Jan Sijbers and B. A. Oostra and P. J. Willems}
}
@inproceedings {mverhoyejsijberspscheunddvandyckReyniersKooyWillemsCrasOostraavdlinde1997,
	title = {In vivo assessment of cerebellum volume in transgenic fragile X knockout mice using MTI microscopy at 7T},
	booktitle = {Proceedings of the European Society for Magnetic Resonance in Medicine and Biology: 14th annual meeting},
	volume = {2},
	number = {2},
	year = {1997},
	month = {September},
	pages = {45-46},
	address = {Brussels, Belgium},
	author = {Marleen Verhoye and Jan Sijbers and Paul Scheunders and Dirk Van Dyck and E. Reyniers and R.F. Kooy and P. J. Willems and P. Cras and B. A. Oostra and Annemie Van Der Linden}
}
@inproceedings {KooyReyniersmverhoyejsijbersFransenCampCrasOostraavdlindeWillems1997,
	title = {MRI as a tool to study brain structure from mouse models of mental retardation},
	booktitle = {Abstracts of the 8th international workshop on Fragile X syndrome and X-linked mental retardation},
	year = {1997},
	month = {August},
	address = {Picton, Ontario, Canada},
	author = {R.F. Kooy and E. Reyniers and Marleen Verhoye and Jan Sijbers and Erik Fransen and C. Van Camp and P. Cras and B. A. Oostra and Annemie Van Der Linden and P. J. Willems}
}
@article {gvdwouwepscheunddvandyckWuytsHeyning1997,
	title = {Voice recognition from spectrograms: a wavelet based approach},
	journal = {Fractals},
	volume = {5},
	year = {1997},
	pages = {165-172},
	author = {G. Van de Wouwer and Paul Scheunders and Dirk Van Dyck and Floris L Wuyts and Paul H Van de Heyning}
}
@inproceedings {mverhoyeavdlindejsijberspscheunddvandyckReyniersKooyWillemsCrasOostra1996,
	title = {High resolution MRI study of the cerebellum of mice as a function of age, in a mouse model for fragile X mental retardation},
	booktitle = {Proceedings of the European Society for Magnetic Resonance in Medicine and Biology},
	volume = {2},
	number = {2},
	year = {1996},
	month = {September},
	pages = {168},
	address = {Prague, Czech Republic},
	author = {Marleen Verhoye and Annemie Van Der Linden and Jan Sijbers and Paul Scheunders and Dirk Van Dyck and E. Reyniers and R.F. Kooy and P. J. Willems and P. Cras and B. A. Oostra}
}
@article {slivenspscheundgvdwouwedvandyckSmetsWinkelmansBogaerts1996,
	title = {A texture analysis approach to corrosion image classification},
	journal = {Microscopy, Microanalysis, Microstructures},
	volume = {7},
	year = {1996},
	pages = {1-10},
	author = {S. Livens and Paul Scheunders and G. Van de Wouwer and Dirk Van Dyck and H. Smets and J. Winkelmans and W. Bogaerts}
}
@inproceedings {gvdwouwepscheunddvandyckWuytsHeyning1996,
	title = {Voice classification by wavelet transforms and fuzzy interpreted LVQ networks},
	booktitle = {Proceedings International Symposium on Soft Computing and Intelligent Industrial Automation, Reading, UK, March 26-28},
	year = {1996},
	pages = {171-177},
	author = {G. Van de Wouwer and Paul Scheunders and Dirk Van Dyck and Floris L Wuyts and Paul H Van de Heyning}
}
@inproceedings {gvdwouwepscheunddvandyckBodtWuytsHeyning1996,
	title = {Wavelet-FILVQ classifier for speech analysis},
	booktitle = {Proc. ICPR{\textquoteright}96 Internat. Conference on Pattern Recognition , D, pp. 214-218, Vienna, august 25-30},
	year = {1996},
	pages = {214-218},
	author = {G. Van de Wouwer and Paul Scheunders and Dirk Van Dyck and M. De Bodt and Floris L Wuyts and Paul H Van de Heyning}
}
@article {slivenspscheundgvdwouwedvandyckSmetsWinkelmansBogaerts1995,
	title = {Classification of corrosion images by wavelet signatures and LVQ networks},
	journal = {Lecture Notes in Computer Science},
	volume = {970},
	year = {1995},
	pages = {538-543},
	author = {S. Livens and Paul Scheunders and G. Van de Wouwer and Dirk Van Dyck and H. Smets and J. Winkelmans and W. Bogaerts}
}
@article {pscheundClerckWille1994,
	title = {Computerized image storage and analysis of contracting cardiac myocytes},
	journal = {Journal of Computer Assisted Microscopy},
	volume = {6},
	number = {2},
	year = {1994},
	pages = {77-83},
	author = {Paul Scheunders and N. De Clerck and J. Wille}
}
