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K. J. Batenburg and Sijbers, J., “DART: A practical reconstruction algorithm for discrete tomography”, IEEE Transactions on Image Processing, vol. 20, pp. 2542-2553, 2011.PDF icon Download paper (2.12 MB)
K. J. Batenburg and Sijbers, J., “Dynamic tomography angle selection”, U.S. Patent PCT/EP2012/0714212013.
K. J. Batenburg, Bals, S., Sijbers, J., Kubel, C., Midgley, P. A., Hernandez, J. C., Kaiser, U., Encina, E. R., Coronado, E. A., and Van Tendeloo, G., “3D imaging of nanomaterials by discrete tomography”, Ultramicroscopy, vol. 109, pp. 730-740, 2009.
K. J. Batenburg, Van Aarle, W., and Sijbers, J., “Grey Level Estimation for Discrete Tomography”, in Discrete Geometry for Computer Imaging, 2009, vol. 5810, pp. 517-529.
K. J. Batenburg, Bals, S., Van Aert, S., Roelandts, T., and Sijbers, J., “Ultra-High Resolution Electron Tomography for Materials Science: A Roadmap”, Microscopy and Microanalysis 2011 Meeting. Nashville, TN, United States, 2011.
K. J. Batenburg, Sijbers, J., and Van de Casteele, E., “Automatic multiple threshold scheme for segmentation of tomograms”, in Proceedings of the Biomedical Engineering IEEE/EMBS Benelux Symposium, Brussels, Belgium, 2006, vol. 2, pp. 143-146.
K. J. Batenburg and Sijbers, J., “Optimal Threshold Selection for Tomogram Segmentation by Projection Distance Minimization”, IEEE Transactions on Medical Imaging, vol. 28, pp. 676-686, 2009.PDF icon Download full paper (2.51 MB)
K. J. Batenburg, Sijbers, J., Poulsen, H. F., and Knudsen, E., “DART: A Robust Algorithm for Fast Reconstruction of 3D Grain Maps”, Journal of Applied Crystallography, vol. 43, pp. 1464-1473, 2010.PDF icon Download paper (824.99 KB)
K. J. Batenburg and Sijbers, J., “Automatic local thresholding of tomographic reconstructions based on the projection data”, in SPIE Medical Imaging, San Diego, CA, USA, 2008, vol. 6913, p. 69132.PDF icon Download full paper (857.39 KB)
K. J. Batenburg, De Carlo, F., Mancini, L., and Sijbers, J., “Advanced X-ray tomography: experiment, modeling, and algorithms”, Measurement Science and Technology, vol. 29, no. 8, p. 080101, 2018.
K. J. Batenburg and Sijbers, J., “Generic iterative subset algorithms for discrete tomography”, Discrete Applied Mathematics, vol. 157, pp. 438-451, 2009.PDF icon Download paper (1.41 MB)
K. J. Batenburg and Sijbers, J., “Adaptive thresholding of tomograms by projection distance minimization”, Pattern Recognition, vol. 42, pp. 2297-2305, 2009.PDF icon Download paper (1.05 MB)
G. Barisano, Sepehrband, F., Collins, H. R., Jillings, S., Jeurissen, B., Taylor, A. J., Schoenmaekers, C., De Laet, C., Rukavishnikov, I., Nosikova, I., Rumshiskaya, A., Annen, J., Sijbers, J., Laureys, S. S. L., Van Ombergen, A., Petrovichev, V., Sinitsyn, V., Pechenkova, E. V., Grishin, A., Eulenburg, Pzu, Law, M., Sunaert, S., Parizel, P. M., Tomilovskaya, E., Roberts, D., and Wuyts, F. L., “The effect of prolonged Spaceflight on Cerebrospinal Fluid and Perivascular Spaces of Astronauts and Cosmonauts”, PNAS, vol. 119, no. 17, 2022.
S. Bals, Batenburg, K. J., Verbeeck, J., Sijbers, J., and Van Tendeloo, G., “Quantitative three-dimensional reconstruction of catalyst particles for bamboo-like carbon nanotubes”, Nano Letters, vol. 7, pp. 3669-3674, 2007.
M. Baillieux and Scheunders, P., “On-line determination of the velocity of simultaneously moving organisms by image analysis for the detection of sublethal toxicity”, Water Research, vol. 32, pp. 1027-1034, 1998.
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B. Auer, Kalluri, K., De Beenhouwer, J., Doty, K., Zeraatkar, N., Kuo, P. H., Furenlid, L. R., and King, M. A., “Reconstruction using Depth of Interaction Information of Curved and Flat Detector Designs for Quantitative Multi-Pinhole Brain SPECT”, Journal of Nuclear Medicine, vol. 61, p. 103, 2020.PDF icon snm2020_recon_curved.pdf (103.23 KB)
B. Auer, Zeraatkar, N., De Beenhouwer, J., Kalluri, K., Kuo, P. H., Furenlid, L. R., and King, M. A., “Investigation of a Monte Carlo simulation and an analytic-based approach for modeling the system response for clinical I-123 brain SPECT imaging”, in 15th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2019, vol. 11072, pp. 187 – 190.
B. Auer, Könik, A., Fromme, T. J., Kalluri, K., De Beenhouwer, J., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary evaluation of surface mesh modeling of system geometry, anatomy phantom, and source activity for GATE simulations”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
B. Auer, De Beenhouwer, J., Zeraatkar, N., Kuo, P. H., Furenlid, L. R., and King, M. A., “Preliminary investigation of attenuation and scatter correction strategies for a next-generation SPECT system dedicated to quantitative clinical brain imaging”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Manchester, UK, 2019.
B. Auer, De Beenhouwer, J., Fromme, T. J., Kalluri, K., Goding, J. C., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary investigation of design parameters of an innovative multi- pinhole system dedicated to brain SPECT imaging”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
B. Auer, Kalluri, K., Abayazeed, A. H., De Beenhouwer, J., Zeraatkar, N., Lindsay, C., Momsen, N., R. Richards, G., May, M., Kupinski, M. A., Kuo, P. H., Furenlid, L. R., and King, M. A., “Aperture size selection for improved brain tumor detection and quantification in multi-pinhole 123I-CLINDE SPECT imaging”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Boston, USA (2020), 2020.
B. Auer, Kalluri, K., De Beenhouwer, J., Zeraatkar, N., Momsen, N., Kuo, P. H., Furenlid, L. R., and King, M. A., “Keel-Edge Height Selection for Improved Multi-Pinhole 123I Brain SPECT Imaging”, Journal of Nuclear Medicine, vol. 61, p. 573, 2020.PDF icon Download paper (127.73 KB)
B. Auer, Kalluri, K., De Beenhouwer, J., Zeraatkar, N., Könik, A., Kuo, P. H., Furenlid, L. R., and King, M. A., “Investigation of keel versus knife edge pinhole profiles for a next-generation SPECT system dedicated to clinical brain imaging”, 2nd International Conference on Monte Carlo Techniques for Medical Applications. 2019.
M. Shahrimie Asaari, Mishra, P., Mertens, S., Dhondt, S., Wuyts, N., and Scheunders, P., “Modeling effects of illumination and plant geometry on leaf reflectance spectra in close-range hyperspectral imaging”, in 8th WHISPERS - Evolution in Remote Sensing, Los Angeles, USA, 2016.
M. Shahrimie Asaari, Mertens, S., Dhondt, S., Wuyts, N., and Scheunders, P., “Detection of plant responses to drought using close-range hyperspectral imaging in a high-throughput phenotyping platform”, in IEEE Whispers 2018, Workshop on Hyperspectral Image and Signal Processing, Amsterdam, 23-26 September , 2018.

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