Publications

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Journal Article
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging, Frontiers in Neuroscience, pp. 1-18, 2022.PDF icon Download paper (5.96 MB)
B. Shafieizargar, Byanju, R., Sijbers, J., Klein, S., den Dekker, A. J., and Poot, D. H. J., Systematic review of reconstruction techniques for accelerated quantitative MRI, Magnetic Resonance in Medicine, vol. 90, no. 3, pp. 1172-1208, 2023.PDF icon Download paper (2.91 MB)
G. Van Steenkiste, Poot, D. H. J., Jeurissen, B., den Dekker, A. J., Vanhevel, F., Parizel, P. M., and Sijbers, J., Super-resolution T1 estimation: quantitative high resolution T1 mapping from a set of low resolution T1 weighted images with different slice orientations, Magnetic Resonance in Medicine, vol. 77, no. 5, pp. 1818–1830, 2017.PDF icon Download paper (3.3 MB)
G. Van Steenkiste, Jeurissen, B., Veraart, J., den Dekker, A. J., Parizel, P. M., Poot, D. H. J., and Sijbers, J., Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations, Magnetic Resonance in Medicine, vol. 75, no. 1, pp. 181-195, 2016.
D. H. J. Poot, Jeurissen, B., Bastiaensen, Y., Veraart, J., Van Hecke, W., Parizel, P. M., and Sijbers, J., Super-Resolution for Multislice Diffusion Tensor Imaging, Magnetic Resonance in Medicine, vol. 69, no. 1, pp. 103–113, 2013.PDF icon Download paper (1.04 MB)
E. Ribeiro Sabidussi, Klein, S., Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., Recurrent Inference Machines as inverse problem solvers for MR relaxometry, Medical Image Analysis, vol. 74, pp. 1-11, 2021.PDF icon Download paper (2.26 MB)
D. H. J. Poot, den Dekker, A. J., Achten, E., Verhoye, M., and Sijbers, J., Optimal experimental design for Diffusion Kurtosis Imaging, IEEE Transactions on Medical Imaging, vol. 29, pp. 819-829, 2010.PDF icon Download paper (1.12 MB)
J. Rajan, Poot, D. H. J., Juntu, J., and Sijbers, J., Noise measurement from magnitude MRI using local estimates of variance and skewness., Physics in medicine and biology, vol. 55, no. 16, pp. N441-9, 2010.PDF icon Download paper (219.85 KB)
J. Veraart, Poot, D. H. J., Van Hecke, W., Blockx, I., Van Der Linden, A., Verhoye, M., and Sijbers, J., More accurate estimation of diffusion tensor parameters using diffusion kurtosis imaging, Magnetic Resonance in Medicine, vol. 65, pp. 138-145, 2011.PDF icon Download paper (387.31 KB)
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment., NeuroImage, vol. 59, pp. 957-67, 2012.
R. Delgado Y Palacios, Adriaan, C., Kim, H., Verhoye, M., Poot, D. H. J., Jouke, D., Van Audekerke, J., Benveniste, H., Sijbers, J., Wiborg, O., and Van Der Linden, A., Magnetic resonance imaging and spectroscopy reveal differential hippocampal changes in anhedonic and resilient subtypes of the chronic mild stress rat model, Biological psychiatry, vol. 70, pp. 449-457, 2011.
A. J. den Dekker, Poot, D. H. J., Bos, R., and Sijbers, J., Likelihood based hypothesis tests for brain activation detection from MRI data disturbed by colored noise: a simulation study, IEEE Transactions on Medical Imaging, vol. 28, pp. 287-296, 2009.
Q. Beirinckx, Ramos-Llordén, G., Jeurissen, B., Poot, D. H. J., Parizel, P. M., Verhoye, M., Sijbers, J., and den Dekker, A. J., Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study, Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.PDF icon Download paper (final author version) (2.15 MB)
D. H. J. Poot, Pintjens, W., Verhoye, M., Van Der Linden, A., and Sijbers, J., Improved B0 field map estimation for high field EPI, Magnetic Resonance Imaging, vol. 28, pp. 441-450, 2010.PDF icon Download paper (1.29 MB)
E. Ribeiro Sabidussi, Klein, S., Jeurissen, B., and Poot, D. H. J., dtiRIM: A generalisable deep learning method for diffusion tensor imaging, Neuroimage, vol. 269, 2023.PDF icon Download paper (5.11 MB)
W. Van Hecke, Sijbers, J., De Backer, S., Poot, D. H. J., Parizel, P. M., and Leemans, A., On the construction of a ground truth framework for evaluating voxel-based diffusion tensor MRI analysis methods, NeuroImage, vol. 46, pp. 692-707, 2009.PDF icon Download paper (4.14 MB)
J. Sijbers, Poot, D. H. J., den Dekker, A. J., and Pintjens, W., Automatic estimation of the noise variance from the histogram of a magnetic resonance image, Physics in Medicine and Biology, vol. 52, pp. 1335-1348, 2007.PDF icon Download paper (297.18 KB)
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Klein, S., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., ADEPT: Accurate Diffusion EPI with multi-contrast shoTs, Magnetic Resonance in Medicine, vol. 89, no. 1, pp. 396-410, 2023.PDF icon Download paper (5.82 MB)

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