Publications

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2019
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., Atom column detection from STEM images using the maximum a posteriori probability rule, MC 2019, Berlin, Germany. 2019.
J. Fatermans, den Dekker, A. J., and Van Aert, S., Atom detection from electron microscopy images, RBSM 2019, Louvain-la-Neuve, Belgium. p. 15, 2019.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: is sacrificing part of the PCASL scan time for measurement of labeling efficiency and T1 of blood beneficial?, University of Michigan international workshop on arterial spin labeling MRI: technical updates and clinical experience, March 9-10 2019, Ann Arbor, USA. 2019.PDF icon Download abstract (1.31 MB)
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: should measurement of T1 of blood and labeling efficiency be included and should a single- or multi-PLD protocol be used in a five-minute protocol for PCASL?, 11th Annual Meeting of ISMRM Benelux, January 17th 2019, Leiden, The Netherlands. 2019.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: what to include when 5 minutes are available for perfusion imaging by PCASL?, 27th Annual Meeting of ISMRM, Montreal, Canada. 2019.
A. Presenti, Sijbers, J., den Dekker, A. J., and De Beenhouwer, J., CAD-based defect inspection with optimal view angle selection based on polychromatic X-ray projection images, in 9th Conference on Industrial Computed Tomography, Padova, Italy, 2019, pp. 1-5.PDF icon ict2019_full_paper_55.pdf (216.2 KB)
E. Ribeiro Sabidussi, Nicastro, M., Bazrafkan, S., Beirinckx, Q., Jeurissen, B., Sijbers, J., den Dekker, A. J., Klein, S., and Poot, D. H. J., A deep learning approach to T1 mapping in quantitative MRI, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., Diffusion time dependence in the mid-time regime: a simulation study using PGSE., 27th Annual Meeting of the ISMRM. Montreal, Canada, 2019.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., Effect of diffusion time dependence on parameter estimation in the clinical time frame: a simulation study using PGSE, 11th Annual Meeting of the ISMRM Benelux Chapter. Leiden, the Netherlands, 2019.
J. Fatermans, Van Aert, S., and den Dekker, A. J., The maximum a posteriori probability rule for atom column detection from HAADF STEM images, Ultramicroscopy, vol. 201, pp. 81-91, 2019.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., Optimal design of a blended diffusion/relaxometry experiment, 36th Annual Scientific Meeting of the ESMRMB. Rotterdam, the Netherlands, 2019.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., Quantifying 3D atomic structures of nanomaterials and their dynamics using model-based scanning transmission electron microscopy, Spring Meeting of the EMRS, Nice, France. 2019.
V. Anania, Billiet, T., Jeurissen, B., Sijbers, J., and den Dekker, A. J., Robust outlier detection for diffusion kurtosis MRI based on IRLLS, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology, vol. 32. 2019.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., Strategies for quantifying 3D atomic structures of nanomaterials and their dynamics using dose-efficient ADF STEM, PICO2019, Vaalsbroek, The Netherlands. 2019.
Q. Beirinckx, Jeurissen, B., Verhoye, M., den Dekker, A. J., and Sijbers, J., Super-resolution T1 mapping with integrated motion compensation in a joint maximum likelihood framework, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P. - J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., Voxelwise harmonisation of FA on a cohort of 605 healthy subjects using ComBat: an exploratory study, ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, NL. 2019.
2018
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., Absolute CBF quantification in multi-time point ASL: the T1 issue, 10th Annual Meeting of ISMRM Benelux, January 26th 2018, Antwerp, Belgium. 2018.
G. Ramos-Llordén, Beirinckx, Q., den Dekker, A. J., and Sijbers, J., Accurate and precise MRI relaxometry: the often disregarded but critical role of statistical parameter estimation, Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 26th Annual Meeting. Paris, France, p. 5664, 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., Bayesian analysis of noisy scanning transmission electron microscopy images for single atom detection, SCANDEM 2018, Technical University of Denmark, Kgs. Lyngby, Denmark. p. 95, 2018.
Q. Collier, Veraart, J., Jeurissen, B., Vanhevel, F., Pullens, P., Parizel, P. M., den Dekker, A. J., and Sijbers, J., Diffusion kurtosis imaging with free water elimination: a Bayesian estimation approach, Magnetic Resonance in Medicine, vol. 80, no. 2, pp. 802-813, 2018.PDF icon Download paper (1.93 MB)
G. Ramos-Llordén, Beirinckx, Q., den Dekker, A. J., and Sijbers, J., An educational presentation on accurate and precise MRI relaxometry: the often disregarded but critical role of statistical parameter estimation, 10th Annual Meeting of the ISMRM Benelux Chapter. Antwerp, Belgium, 2018.
G. Ramos-Llordén, Improved MRI Relaxometry through Statistical Signal Processing, University of Antwerp, Antwerp, 2018.PDF icon Download thesis (19.25 MB)
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials, IMC19, Sydney, Australia. 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., The maximum a posteriori probability rule to detect single atoms from low signal-to-noise ratio scanning transmission electron microscopy images, IMC19, Sydney, Australia. 2018.

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