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2021
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., den Dekker, A. J., and Sijbers, J., “Multi-contrast multi-shot EPI for accelerated diffusion MRI”, in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2021, pp. 3869-3872.
V. Anania, Jeurissen, B., Morez, J., Buikema, A. Eline, Billiet, T., Sijbers, J., and den Dekker, A. J., “Optimal experimental design for the T2-weighted diffusion kurtosis imaging free water elimination model”, ESMRMB 2021 Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy, vol. 34. pp. S54-S55, 2021.
M. Siqueira Pinto, Winzeck, S., Correia, M. M., Kornaropoulos, E. N., Menon, D. K., Glocker, B., den Dekker, A. J., Sijbers, J., Guns, P. - J., Van Dyck, P., and Newcombe, V. F. J., “Outcome prediction in Mild Traumatic Brain Injury patients using conventional and diffusion MRI via Support Vector Machine: A CENTER-TBI study”, ISMRM & SMRT Annual Meeting. 2021.
M. Siqueira Pinto, Winzeck, S., Richter, S., Correia, M. M., Kornaropoulos, E. N., Menon, D. K., Glocker, B., Guns, P. - J., den Dekker, A. J., Sijbers, J., Newcombe, V. F. J., and Van Dyck, P., “Outcome prediction of mild traumatic brain injury using support vector machine based on longitudinal MRdiffusion imaging from CENTER-TBI”, Magn Reson Mater Phy (ESMRMB), vol. 34. p. S54, 2021.
E. Ribeiro Sabidussi, Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., “Recurrent Inference Machines as Inverse Problem Solvers for MR Relaxometry”, in MIDL 2021 - Medical Imaging with Deep Learning, 2021.
E. Ribeiro Sabidussi, Klein, S., Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., “Recurrent Inference Machines as inverse problem solvers for MR relaxometry”, Medical Image Analysis, vol. 74, pp. 1-11, 2021.PDF icon Download paper (2.26 MB)
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “Rotated or shifted sets of multi-slice MR images for super-resolution reconstruction? A Bayesian answer”, Magn Reson Mater Phy (ESMRMB), vol. 34. pp. S56-S57, 2021.
C. Smekens, Beirinckx, Q., Vanhevel, F., Van Dyck, P., den Dekker, A. J., Sijbers, J., Janssens, T., and Jeurissen, B., “Super-resolution T2* mapping of the knee using UTE Spiral VIBE MRI”, Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 29th Annual Meeting, An Online Experience. p. 3920, 2021.
2020
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., Friedrich, T., Lobato, I., O'Leary, C. M., Varambhia, A., Altantzis, T., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “3D Atomic Scale Quantification of Nanostructures and their Dynamics Using Model-based STEM”, Microscopy & Microanalysis 2020 (online), Milwaukee, United States. 2020.
P. Bladt, “Accurate and precise perfusion parameter estimation in pseudo-continuous arterial spin labeling MRI”, 2020.PDF icon Download PhD thesis (13.17 MB)
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Atom column detection from simultaneously acquired ABF and ADF STEM images”, Ultramicroscopy, vol. 219, p. 113046, 2020.
J. Fatermans, den Dekker, A. J., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Bayesian model selection for atom column detection from ABF-ADF STEM images”, Virtual Early Career EMC 2020 (online), Copenhagen, Denmark. 2020.
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., “The costs and benefits of estimating T1 of tissue alongside cerebral blood flow and arterial transit time in pseudo-continuous arterial spin labeling”, NMR in Biomedicine, vol. 33, no. 12, pp. 1-17, 2020.PDF icon Download paper (16.44 MB)
M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P. - J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., “Harmonisation of Brain Diffusion MRI: Concepts and Methods”, Frontiers in Neuroscience , vol. 14, pp. 1-17, 2020.PDF icon Download paper (2.61 MB)
V. Anania, Billiet, T., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., “Improved voxel-wise quantification of diffusion and kurtosis metrics in the presence of noise and intensity outliers”, 12th Annual Meeting ISMRM Benelux Chapter, Arnhem, The Netherlands. 2020.
B. Shafieizargar, Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Joint estimation of phase and diffusion tensor parameters from multi-shot k-q-space data: a proof of concept”, International Society for Magnetic Resonance in Medicine (ISMRM), vol. 28. 2020.
B. Shafieizargar, Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Joint estimation of phase and diffusion tensor parameters from multi-shot k-q-space data: a proof of concept”, ISMRM-Benelux, vol. 12. 2020.
Q. Beirinckx, Ramos-Llordén, G., Jeurissen, B., Poot, D. H. J., Parizel, P. M., Verhoye, M., Sijbers, J., and den Dekker, A. J., “Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study”, Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.PDF icon Download paper (final author version) (2.15 MB)
M. Nicastro, Beirinckx, Q., Bladt, P., Jeurissen, B., Klein, S., Sijbers, J., Poot, D. H. J., and den Dekker, A. J., “Optimal design of a T1 super-resolution reconstruction experiment: a simulation study”, 12th Annual Meeting of the ISMRM Benelux Chapter. 2020.PDF icon Download abstract (810.88 KB)
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., E Irmak, A., Friedrich, T., Lobato, I., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “Strategies for quantifying the 3D atomic structure and the dynamics of nanomaterials using model-based STEM”, Virtual MRS Spring/ Fall Meeting, Boston, United States (online). 2020.
P. Bladt, Beirinckx, Q., Van der Plas, M., Schmid, S., Teeuwisse, W., Jeurissen, B., den Dekker, A. J., Sijbers, J., and van Osch, M., “Super-resolution reconstruction of single-PLD pseudo-continuous ASL images”, Proc Intl Soc Mag Reson Med 28. p. 3293, 2020.
P. Bladt, Beirinckx, Q., van der Plas, M. C. E., Schmid, S., Teeuwisse, W. M., Jeurissen, B., den Dekker, A. J., Sijbers, J., and van Osch, M. J. P., “Super-resolution reconstruction of single-PLD pseudo-continuous ASL images”, Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 28th Annual Meeting, Virtual conference and exhibition. p. 3293, 2020.
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., Schmid, S., Teeuwisse, W. M., Jeurissen, B., den Dekker, A. J., Sijbers, J., and van Osch, M. J. P., “Super-resolution strategies for single-PLD pseudo-continuous ASL”, 12th Annual Meeting of the ISMRM Benelux Chapter. Arnhem, The Netherlands, 2020.
P. Bladt, van Osch, M. J. P., Clement, P., Achten, E., Sijbers, J., and den Dekker, A. J., “Supporting measurements or more averages? How to quantify cerebral blood flow most reliably in 5 minutes by arterial spin labeling”, Magnetic Resonance in Medicine, vol. 84, no. 5, pp. 2523-2536, 2020.PDF icon Download paper (1.3 MB)
2019
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Atom column detection from STEM images using the maximum a posteriori probability rule”, MC 2019, Berlin, Germany. 2019.

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