Publications

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2017
Gonnissen, J., A. De Backer, A J. den Dekker, J. Sijbers, and S. Van Aert, "Atom-counting in High Resolution Electron Microscopy: TEM or STEM - that’s the question", Ultramicroscopy, vol. 147, pp. 112–120, 2017.
Fatermans, J., K. Müller-Caspary, A J. den Dekker, and S. Van Aert, "Detection of atomic columns from noisy STEM images", MC 2017, Lausanne, Switzerland, 2017.
Sudeep, P. V., P. Palanisamy, C. Kesavadas, J. Sijbers, A J. den Dekker, and J. Rajan, "A nonlocal maximum likelihood estimation method for enhancing magnetic resonance phase maps", Signal Image and Video Processing, vol. 11, issue 5, pp. 913-920, 2017.
Ramos-Llordén, G., A J. den Dekker, and J. Sijbers, "Partial Discreteness: a Novel Prior for Magnetic Resonance Image Reconstruction", IEEE Transactions on Medical Imaging, vol. 36, issue 5, pp. 1041 - 1053, 2017. PDF icon Download paper (3.72 MB)
Collier, Q., J. Veraart, A J. den Dekker, F. Vanhevel, P. M. Parizel, and J. Sijbers, "Solving the Free Water Elimination Estimation Problem by Incorporating T2 Relaxation Properties", International Society of Magnetic Resonance in Medicine, 2017. PDF icon Download poster (996.02 KB)
Ramos-Llordén, G., A J. den Dekker, P. Bladt, A. Cuyt, and J. Sijbers, "Statistically optimal separation of multi-component MR signals with a Majorize-Minimize approach: application to MWF estimation", 34th annual scientific meeting of the ESMRMB, 2017.
Bladt, P., Q. Beirinckx, G. Van Steenkiste, B. Jeurissen, E. Achten, A J. den Dekker, and J. Sijbers, "Super-resolution multi-PLD PCASL: a simulation study", 34th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Barcelona, Spain, vol. 30 (Suppl. 1), no. S396: Magn Reson Mater Phy, 2017.
Van Steenkiste, G., D. H. J. Poot, B. Jeurissen, A J. den Dekker, F. Vanhevel, P. M. Parizel, and J. Sijbers, "Super-resolution T1 estimation: quantitative high resolution T1 mapping from a set of low resolution T1 weighted images with different slice orientations", Magnetic Resonance in Medicine, vol. 77, issue 5, pp. 1818–1830, 2017. PDF icon Download paper (3.3 MB)
Ramos-Llordén, G., A J. den Dekker, G. Van Steenkiste, B. Jeurissen, F. Vanhevel, J. Van Audekerke, M. Verhoye, and J. Sijbers, "A unified Maximum Likelihood framework for simultaneous motion and T1 estimation in quantitative MR T1 mapping", IEEE Transactions on Medical Imaging, vol. 36, issue 2, pp. 433 - 446, 2017.
Sanctorum, J., E. Janssens, A J. den Dekker, S. Senck, C. Heinzl, J. De Beenhouwer, and J. Sijbers, "A workflow to reconstruct grating-based X-ray phase contrast CT images: application to CFRP samples", 4th Conference on X-ray and Neutron Phase Imaging with Gratings, Zürich, Switzerland, pp. 139-140, 2017. PDF icon Download poster (1008.67 KB)PDF icon Download abstract (294.87 KB)
2016
Van Aert, S., A. De Backer, G. T. Martinez, A J. den Dekker, D. Van Dyck, S. Bals, and G. Van Tendeloo, "Advanced electron crystallography through model-based imaging", IUCrJ, vol. 3, no. 1, Jan, 2016.
Fatermans, J., S. Van Aert, and A J. den Dekker, "Bayesian model-order selection in electron microscopy to detect atomic columns in noisy images", RBSM 2016, Brussels, Belgium, 2016.
Gonnissen, J., A. De Backer, A J. den Dekker, J. Sijbers, and S. Van Aert, "Detecting and locating light atoms from high-resolution STEM images: the quest for a single optimal design Ultramicroscopy", Ultramicroscopy, vol. 170, pp. 128-138, 2016.
Van Steenkiste, G., B. Jeurissen, S. Baete, A J. den Dekker, D. H. J. Poot, F. Boada, and J. Sijbers, "In vivo high resolution diffusion tensor imaging in a clinically acceptable scan time by combining super resolution reconstruction with simultaneous multi-slice acquisition", ISMRM Benelux Chapter, vol. 8, no. P-036, 2016.
Bladt, P., G. Van Steenkiste, G. Ramos-Llordén, A J. den Dekker, and J. Sijbers, "Multi-voxel algorithm for quantitative bi-exponential MRI T1 estimation", SPIE Medical Imaging, vol. 9784, San Diego, California, United States of America, pp. 978402, 2016. PDF icon Download paper (624.23 KB)
Ramos-Llordén, G., A J. den Dekker, M. Björk, M. Verhoye, and J. Sijbers, "NOVIFAST: A fast non-linear least squares method for accurate and precise estimation of T1 from SPGR signals", 24th Annual Meeting of the ISMRM, Singapore, 2016.
Collier, Q., A J. den Dekker, B. Jeurissen, and J. Sijbers, "Robust DKI parameter estimation in case of CSF partial volume effects", ISMRM 24th annual meeting, Singapore, 2016.
Collier, Q., A J. den Dekker, B. Jeurissen, and J. Sijbers, "A robust framework for combined estimation of DKI and CSF partial volume fraction parameters", 8th annual meeting of the ISMRM Benelux chapter, Eindhoven, Netherlands, 2016.
Van Steenkiste, G., B. Jeurissen, J. Veraart, A J. den Dekker, P. M. Parizel, D. H. J. Poot, and J. Sijbers, "Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations", Magnetic Resonance in Medicine, vol. 75, issue 1, pp. 181-195, 2016.
2015
Collier, Q., J. Veraart, A J. den Dekker, B. Jeurissen, and J. Sijbers, "CSF partial volume modeling in diffusion kurtosis imaging: a comparative parameter estimation study", Front. Neuroinform. Conference Abstract: Second Belgian Neuroinformatics Congress, 11/2015.
Van Steenkiste, G., B. Jeurissen, S. Baete, A J. den Dekker, D. H. J. Poot, F. Boada, and J. Sijbers, "High resolution diffusion tensor imaging in a clinically feasible scan time", Front. Neuroinform. Conference Abstract: Second Belgian Neuroinformatics Congress., 2015.
Van Steenkiste, G., D. H. J. Poot, B. Jeurissen, A J. den Dekker, and J. Sijbers, "High resolution T1 estimation from multiple low resolution magnetic resonance images", IEEE International Symposium on Biomedical Imaging (ISBI): From nano to macro, vol. 12, pp. 1036-1039, 2015.
Collier, Q., J. Veraart, B. Jeurissen, A J. den Dekker, and J. Sijbers, "Iterative Reweighted Linear Least Squares for Accurate, Fast, and Robust Estimation of Diffusion Magnetic Resonance Parameters", Magnetic Resonance in Medicine, vol. 73, issue 6, pp. 2174–2184, 2015.
Ramos-Llordén, G., H. Segers, W J. Palenstijn, A J. den Dekker, and J. Sijbers, "Partial discreteness: a new type of prior knowledge for MRI reconstruction", 23rd Annual meeting of the ISMRM, Toronto, Canada., vol. 23, pp. 3417, 2015. PDF icon Download abstract (1.14 MB)
Ramos-Llordén, G., H. Segers, W J. Palenstijn, A J. den Dekker, and J. Sijbers, "Partially discrete magnetic resonance tomography", 2015 IEEE International Conference on Image Processing (ICIP), pp. 1653-1657, Sept, 2015.

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