Publications

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Journal Article
W. S. Oliveira, Teixeira, J. V., Tsang, I. R., Cavalcanti, G. D. C., and Sijbers, J., “Unsupervised Retinal Vessel Segmentation Using Combined Filters”, Plos One, vol. 11, pp. 1-21, 2016.
M. Bührer, Xu, H., Eller, J., Sijbers, J., Stampanoni, M., and Marone, F., “Unveiling Water Dynamics in Fuel Cells from Time-Resolved Tomographic Microscopy Data”, Scientific Reports, vol. 10, no. 16388 , 2020.PDF icon Download paper (4.12 MB)
M. Siqueira Pinto, Winzeck, S., Kornaropoulos, E. N., Richter, S., Paolella, R., Correia, M. M., Glocker, B., Williams, G., Vik, A., Posti, J., Håberg, A. Kristine, Stenberg, J., Guns, P. - J., den Dekker, A. J., Menon, D. K., Sijbers, J., Van Dyck, P., and Newcombe, V. F. J., “Use of support vector machines approach via ComBat harmonized diffusion tensor imaging for the diagnosis and prognosis of mild traumatic brain injury: a CENTER-TBI study”, Journal of Neurotrauma, vol. 40, no. 13-14, pp. 1317-1338, 2023.
P. Lopes, Van Herck, P., Verhoelst, E., Wirix-Speetjens, R., Sijbers, J., Bosmans, J., and Vander Sloten, J., “Using particle systems for mitral valve segmentation from 3D transoesophageal echocardiography (3D TOE) - a proof of concept”, Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, vol. 11, no. 1, pp. 112-120, 2023.
J. Sanctorum, Sijbers, J., and De Beenhouwer, J., “Virtual grating approach for Monte Carlo simulations of edge illumination-based x-ray phase contrast imaging”, Optics Express, vol. 31, no. 21, pp. 38695-38708, 2022.PDF icon Download paper (2.95 MB)
B. Fröhler, Elberfeld, T., Möller, T., Weissenböck, J., De Beenhouwer, J., Sijbers, J., Hege, H. - C., Kastner, J., and Heinzl, C., “A Visual Tool for the Analysis of Algorithms for Tomographic Fiber Reconstruction in Materials Science”, Computer Graphics Forum, vol. 38, no. 3, pp. 273-283, 2019.
D. Iuso, Chatterjee, S., Cornelissen, S., Verhees, D., De Beenhouwer, J., and Sijbers, J., “Voxel-wise segmentation for porosity investigation of additive manufactured parts with 3D unsupervised and (deeply) supervised neural models”, Applied Intelligence, vol. 54, pp. 13160–13177, 2024.PDF icon Download paper (2.48 MB)
J. Sijbers, Verhoye, M., Scheunders, P., Van Der Linden, A., Van Dyck, D., and Raman, E., “Watershed based segmentation of 3D MR data for volume quantization”, Magnetic Resonance Imaging, vol. 15, pp. 679-688, 1997.PDF icon Download paper (3.18 MB)
J. Veraart, Sijbers, J., Sunaert, S., Leemans, A., and Jeurissen, B., “Weighted linear least squares estimation of diffusion MRI parameters: Strengths, limitations, and pitfalls.”, NeuroImage, vol. 81, no. 1, pp. 335-346, 2013.PDF icon Download paper (2.89 MB)
H. Zivari Adab, Chalavi, S., Beets, I., Gooijers, J., Leunissen, I., Cheval, B., Collier, Q., Sijbers, J., Jeurissen, B., Swinnen, S. P., and Boisgontier, M., “White matter microstructural organization of interhemispheric pathways predicts different stages of bimanual coordination learning in young and older adults”, European Journal of Neuroscience , vol. 47, no. 5, pp. 446–459, 2018.
B. Huyge, Renders, J., Sanctorum, J., De Beenhouwer, J., and Sijbers, J., “X-ray image reconstruction for continuous acquisitions with a generalized motion model”, Optics Express, vol. 32, no. 22, pp. 39192-39207, 2024.
J. Sanctorum, De Beenhouwer, J., and Sijbers, J., “X-ray phase contrast simulation for grating-based interferometry using GATE”, Optics Express, vol. 28, no. 22, pp. 33390-33412, 2020.PDF icon Download paper (2.5 MB)
Miscellaneous
G. Ramos-Llordén, den Dekker, A. J., and Sijbers, J., “Joint motion correction and estimation for T1 mapping: proof of concept”, Medical Imaging Summer School 2014, Favignana, Italy. 2014.
Patent
M. Van Dael, Verboven, P., Nicolai, B., Dhaene, J., Van Hoorebeke, L., and Sijbers, J., “Automated quality control and selection ”, U.S. Patent PCT/EP2016/0557182016.
J. Cant and Sijbers, J., “Computerized Tomographic Image Exposure and Reconstruction Method”, U.S. Patent PCT/EP2015/0599562016.PDF icon Download patent (595.32 KB)
K. J. Batenburg and Sijbers, J., “Dynamic tomography angle selection”, U.S. Patent PCT/EP2012/0714212013.
K. J. Batenburg, Sijbers, J., and Plantagie, L., “Filter for Tomographic Reconstructions”, U.S. Patent WO2013011031A12014.
J. Sijbers and den Dekker, A. J., “Longitudinal Magnetic Resonance Imaging Method”, U.S. Patent WO2024100240A12024.
J. Cant and Sijbers, J., “Method and system for correcting geometric misalignment during image reconstruction in chest tomosynthesis”, U.S. Patent EP16173767.12016.
T. Huysmans and Sijbers, J., “Method for Mapping Tubular Surfaces to a Cylinder”, U.S. Patent PCT/EP2010/0578822010.PDF icon Initial Publication with ISR (A1 50/2010) (3.52 MB)PDF icon United states patent (2.88 MB)
J. Sijbers, Danckaers, F., and Osstyn, J., “Methods and systems for determining an anatomical reconstruction of a broken bone”, 2024.
J. Sijbers and De Beenhouwer, J., “Mobile imaging of an object using penetrating radiation”, U.S. Patent WO/2017/1783342017.
T. Huysmans, Sijbers, J., and Verstreken, F., “Orthosis”, U.S. Patent WO/2016/1812822016.
J. Sijbers, De Beenhouwer, J., Ling, Y. - T., and Vandervorst, W., “A reconstruction method for atom probe tomography”, U.S. Patent 180175752023.
T. De Schryver, Dierick, M., Van Hoorebeke, L., Verboven, P., Van Dael, M., and Sijbers, J., “Tomography for in-line product inspection”, U.S. Patent EP3106863A12015.

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