Publications

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Conference Abstract
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., The maximum a posteriori probability rule to detect single atoms from low signal-to-noise ratio scanning transmission electron microscopy images, IMC19, Sydney, Australia. 2018.
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., Maximizing precision in PCASL MRI using an optimized sampling strategy, 34th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology, Barcelona, Spain. 2017.
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials, IMC19, Sydney, Australia. 2018.
B. Shafieizargar, Jeurissen, B., den Dekker, A. J., and Sijbers, J., Joint estimation of phase and diffusion tensor parameters from multi-shot k-q-space data: a proof of concept, International Society for Magnetic Resonance in Medicine (ISMRM), vol. 28. 2020.
B. Shafieizargar, Jeurissen, B., den Dekker, A. J., and Sijbers, J., Joint estimation of phase and diffusion tensor parameters from multi-shot k-q-space data: a proof of concept, ISMRM-Benelux, vol. 12. 2020.
G. Van Steenkiste, Jeurissen, B., Baete, S., den Dekker, A. J., Poot, D. H. J., Boada, F., and Sijbers, J., In vivo high resolution diffusion tensor imaging in a clinically acceptable scan time by combining super resolution reconstruction with simultaneous multi-slice acquisition, ISMRM Benelux Chapter, vol. 8. 2016.
V. Anania, Billiet, T., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., Improved voxel-wise quantification of diffusion and kurtosis metrics in the presence of noise and intensity outliers, 12th Annual Meeting ISMRM Benelux Chapter, Arnhem, The Netherlands. 2020.
G. Van Steenkiste, Jeurissen, B., Baete, S., den Dekker, A. J., Poot, D. H. J., Boada, F., and Sijbers, J., High resolution diffusion tensor imaging in a clinically feasible scan time, Front. Neuroinform. Conference Abstract: Second Belgian Neuroinformatics Congress. 2015.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., Effect of diffusion time dependence on parameter estimation in the clinical time frame: a simulation study using PGSE, 11th Annual Meeting of the ISMRM Benelux Chapter. Leiden, the Netherlands, 2019.
G. Ramos-Llordén, Beirinckx, Q., den Dekker, A. J., and Sijbers, J., An educational presentation on accurate and precise MRI relaxometry: the often disregarded but critical role of statistical parameter estimation, 10th Annual Meeting of the ISMRM Benelux Chapter. Antwerp, Belgium, 2018.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., Diffusion time dependence in the mid-time regime: a simulation study using PGSE., 27th Annual Meeting of the ISMRM. Montreal, Canada, 2019.
J. Fatermans, Müller-Caspary, K., den Dekker, A. J., and Van Aert, S., Detection of atomic columns from noisy STEM images, Microscopy Conference 2017 (MC 2017), Lausanne, Switzerland. pp. 445-446, 2017.
E. Ribeiro Sabidussi, Nicastro, M., Bazrafkan, S., Beirinckx, Q., Jeurissen, B., den Dekker, A. J., Klein, S., and Poot, D. H. J., A deep learning approach to T1 mapping in quantitative MRI, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology, Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
Q. Collier, Veraart, J., den Dekker, A. J., Jeurissen, B., and Sijbers, J., CSF partial volume modeling in diffusion kurtosis imaging: a comparative parameter estimation study, Front. Neuroinform. Conference Abstract: Second Belgian Neuroinformatics Congress. 2015.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: what to include when 5 minutes are available for perfusion imaging by PCASL?, 27th Annual Meeting of ISMRM, Montreal, Canada. 2019.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: should measurement of T1 of blood and labeling efficiency be included and should a single- or multi-PLD protocol be used in a five-minute protocol for PCASL?, 11th Annual Meeting of ISMRM Benelux, January 17th 2019, Leiden, The Netherlands. 2019.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., Beyond the consensus: is sacrificing part of the PCASL scan time for measurement of labeling efficiency and T1 of blood beneficial?, University of Michigan international workshop on arterial spin labeling MRI: technical updates and clinical experience, March 9-10 2019, Ann Arbor, USA. 2019.PDF icon Download abstract (1.31 MB)
J. Fatermans, Van Aert, S., and den Dekker, A. J., Bayesian model-order selection in electron microscopy to detect atomic columns in noisy images, RBSM 2016, Brussels, Belgium. p. 53, 2016.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., Bayesian analysis of noisy scanning transmission electron microscopy images for single atom detection, SCANDEM 2018, Technical University of Denmark, Kgs. Lyngby, Denmark. p. 95, 2018.
J. Fatermans, den Dekker, A. J., and Van Aert, S., Atom detection from electron microscopy images, RBSM 2019, Louvain-la-Neuve, Belgium. p. 15, 2019.
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., Atom column detection from STEM images using the maximum a posteriori probability rule, MC 2019, Berlin, Germany. 2019.
G. Ramos-Llordén, Beirinckx, Q., den Dekker, A. J., and Sijbers, J., Accurate and precise MRI relaxometry: the often disregarded but critical role of statistical parameter estimation, 26th Annual Meeting of the ISMRM. Paris, France, 2018.
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., Absolute CBF quantification in multi-time point ASL: the T1 issue, 10th Annual Meeting of ISMRM Benelux, January 26th 2018, Antwerp, Belgium. 2018.
Book Chapter
D. Van Dyck, Bettens, E., Sijbers, J., den Dekker, A. J., van den Bos, A., Op de Beeck, M., Jansen, J., and Zandbergen, H., Resolving atoms: what do we have? what do we want?, in Institute of Physics Conference Series, vol. 153, J. M. Rodenburg, Ed. Cambridge, UK: Institute of Physics Ltd, 1997, pp. 95-100.
A. J. den Dekker and Sijbers, J., Advanced Image Processing in Magnetic Resonance Imaging, in Series: Signal Processing and Communications, vol. 27, L. Landini, Ed. Marcel Dekker, 2005, pp. 85-143.

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