Publications

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Book Chapter
D. Van Dyck, Bettens, E., Sijbers, J., den Dekker, A. J., van den Bos, A., Op de Beeck, M., Jansen, J., and Zandbergen, H., “Resolving atoms: what do we have? what do we want?”, in Institute of Physics Conference Series, vol. 153, J. M. Rodenburg, Ed. Cambridge, UK: Institute of Physics Ltd, 1997, pp. 95-100.
Conference Abstract
S. Hosseinnejad, Bosch, E. G. T., Kohr, H., Lazić, I., Zharinov, V., Franken, E., Sijbers, J., and De Beenhouwer, J., “3D atomic resolution tomography from iDPC-STEM images using multiple atom model prior”, Microscopy Conference. 2021.PDF icon Download abstract (534.35 KB)
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., Friedrich, T., Lobato, I., O'Leary, C. M., Varambhia, A., Altantzis, T., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “3D Atomic Scale Quantification of Nanostructures and their Dynamics Using Model-based STEM”, Microscopy & Microanalysis 2020 (online), Milwaukee, United States. 2020.
G. Van Eyndhoven, Batenburg, K. J., Kazantsev, D., Van Nieuwenhove, V., Lee, P. D., Dobson, K. J., and Sijbers, J., “A 4D CT reconstruction algorithm for fast liquid flow imaging”, Applied Inverse Problems Conference, Helsinki. 2015.
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., “Absolute CBF quantification in multi-time point ASL: the T1 issue”, 10th Annual Meeting of ISMRM Benelux, January 26th 2018, Antwerp, Belgium. 2018.
C. Smekens, Vanhevel, F., Beirinckx, Q., Janssens, T., and Van Dyck, P., “Accelerated Dual-contrast Three-dimensional Knee Magnetic Resonance Imaging Using Super-resolution Reconstructed Deep Learning-enhanced Two-dimensional Dixon Turbo Spin-echo Imaging”, Seminars in Musculoskeletal Radiology, vol. 27, no. S01. Thieme Medical Publishers, Inc., pp. 1-24, 2023.
G. Ramos-Llordén, Beirinckx, Q., den Dekker, A. J., and Sijbers, J., “Accurate and precise MRI relaxometry: the often disregarded but critical role of statistical parameter estimation”, Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 26th Annual Meeting. Paris, France, p. 5664, 2018.
G. Van Eyndhoven, Batenburg, K. J., and Sijbers, J., “Accurate reconstruction of porous samples in CT”, International Conference on Industrial Computed Tomography (ICT). 2014.
B. G. Booth, Keijsers, N. L. W., Huysmans, T., and Sijbers, J., “Advancing Analysis Techniques for Plantar Pressure Videos via Open-Access Contributions”, IEEE International Symposium on Biomedical Imaging (ISBI'19) . 2019.PDF icon Download abstract (86 KB)
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., “Beyond the consensus: is sacrificing part of the PCASL scan time for measurement of labeling efficiency and T1 of blood beneficial?”, University of Michigan international workshop on arterial spin labeling MRI: technical updates and clinical experience, March 9-10 2019, Ann Arbor, USA. 2019.PDF icon Download abstract (1.31 MB)
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., “Beyond the consensus: should measurement of T1 of blood and labeling efficiency be included and should a single- or multi-PLD protocol be used in a five-minute protocol for PCASL?”, 11th Annual Meeting of ISMRM Benelux, January 17th 2019, Leiden, The Netherlands. 2019.
P. Bladt, van Osch, M. J. P., Achten, E., den Dekker, A. J., and Sijbers, J., “Beyond the consensus: what to include when 5 minutes are available for perfusion imaging by PCASL?”, 27th Annual Meeting of ISMRM, Montreal, Canada. 2019.
W. Van Aarle, van der Maar, S., Batenburg, K. J., and Sijbers, J., “Computed tomography on all scales using the ASTRA toolbox”, Liege Image Days 2008: Medical Imaging. 2008.PDF icon wvaarle_poster.pdf (610.59 KB)
Y. D. Reijmer, Leemans, A., Heringa, S. M., Wielaard, I., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Constrained spherical deconvolution based tractography and cognition in Alzheimer’s disease”, Congress of the International Society for Vascular, Cognitive and Behavioural Disorders, vol. 5. Lille, France, 2011.
Y. D. Reijmer, Leemans, A., Heringa, S. M., Wielaard, I., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Constrained spherical deconvolution based tractography and cognition in Alzheimer’s disease”, Human Brain Mapping. Québec, Canada, 2011.
Y. D. Reijmer, Leemans, A., Heringa, S. M., Wielaard, I., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Constrained spherical deconvolution based tractography and cognition in Alzheimer’s disease”, International Conference on Alzheimer’s Disease. Paris, France, 2011.
J. Veraart, Antonsen, B. T., Blockx, I., Van Hecke, W., Jiang, Y., Johnson, A. G., Van Der Linden, A., Leergaard, T. B., Verhoye, M., and Sijbers, J., “Construction of a population based diffusion tensor image atlas of the Sprague Dawley rat brain”, ISMRM, 18th Scientific Meeting and Exhibition. Stockholm, Sweden, 2010.
R. Paolella, de la Rosa, E., Sima, D. M., Dive, D., Durand-Dubief, F., Sappey-Marinier, D., Jeurissen, B., Sijbers, J., and Billiet, T., “Decoding Multiple Sclerosis EDSS disability scores from MRI using Deep Learning”, 38th Annual Scientific Meeting Congress of the European Society for Magnetic Resonance in Medicine and Biology, vol. 34. pp. S57-S58, 2021.
E. Ribeiro Sabidussi, Nicastro, M., Bazrafkan, S., Beirinckx, Q., Jeurissen, B., Sijbers, J., den Dekker, A. J., Klein, S., and Poot, D. H. J., “A deep learning approach to T1 mapping in quantitative MRI”, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
E. Ribeiro Sabidussi, Nicastro, M., Bazrafkan, S., Beirinckx, Q., Jeurissen, B., Sijbers, J., den Dekker, A. J., Klein, S., and Poot, D. H. J., “A deep learning approach to T1 mapping in quantitative MRI”, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
J. Rimpelainen, Bazrafkan, S., Sijbers, J., and De Beenhouwer, J., “Deep learning based missing wedge artefact removal for electron tomography”, Microscopy Conference, Berlin, Germany. pp. 660-661, 2019.
I. Blockx, Verhoye, M., De Groof, G., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., von Horsten, S., and Van Der Linden, A., “Diffusion Kurtosis Imaging (DKI) reveals an early phenotype (P30) in a transgenic rat model for Huntington’s disease”, ISMRM conference proceedings, vol. 2009. p. 359, 2009.
I. Wielaard, Reijmer, Y. D., Leemans, A., Heringa, S. M., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Diffusion tensor imaging and cognition in Alzheimer’s disease: the influence of crossing fibers”, Endo-Neuro Psycho Meeting. Lunteren, The Netherlands, 2011.
A. E. Buikema, den Dekker, A. J., and Sijbers, J., “Diffusion time dependence in the mid-time regime: a simulation study using PGSE.”, 27th Annual Meeting of the ISMRM. Montreal, Canada, 2019.
H. Segers, Palenstijn, W. J., Batenburg, K. J., and Sijbers, J., “Discrete Tomography in MRI: a proof of concept”, Proc. Intl. Soc. Mag. Reson. Med, vol. 21. p. 2662, 2013.

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