Jan Sijbers

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Conference Paper
K. J. Batenburg, Palenstijn, W. J., and Sijbers, J., “Projection and backprojection in tomography: design choices and considerations”, in Workshop on Applications of Discrete Geometry and Mathematical Morphology, 2010, pp. 106-110.PDF icon Download paper (367.34 KB)
J. Rajan, Poot, D. H. J., Juntu, J., and Sijbers, J., “Segmentation Based Noise Variance Estimation from Background MRI Data”, in ICIAR , Porto, Portugal, 2010, vol. 6111, pp. 62-70.
Journal Article
K. J. Batenburg, Bals, S., Sijbers, J., Kubel, C., Midgley, P. A., Hernandez, J. C., Kaiser, U., Encina, E. R., Coronado, E. A., and Van Tendeloo, G., “3D imaging of nanomaterials by discrete tomography”, Ultramicroscopy, vol. 109, pp. 730-740, 2009.
K. J. Batenburg and Sijbers, J., “Adaptive thresholding of tomograms by projection distance minimization”, Pattern Recognition, vol. 42, pp. 2297-2305, 2009.PDF icon Download paper (1.05 MB)
Thesis
D. H. J. Poot, “Advances in the reconstruction and statistical processing of Magnetic Resonance images”, 2009.PDF icon Download thesis (6.18 MB)
Conference Paper
R. Pinho, Tournoy, K. G., Gosselin, R., and Sijbers, J., “Assessment of Tracheal Stenosis Using Active Shape Models of Healthy Tracheas: A Surface Registration Study”, in Proceedings of 2nd International Workshop on Pulmonary Image Analysis, 2009, pp. 125-136.
Journal Article
W. Van Hecke, Sijbers, J., De Backer, S., Poot, D. H. J., Parizel, P. M., and Leemans, A., “On the construction of a ground truth framework for evaluating voxel-based diffusion tensor MRI analysis methods”, NeuroImage, vol. 46, pp. 692-707, 2009.PDF icon Download paper (4.14 MB)
Conference Paper
J. Rajan, Jeurissen, B., Sijbers, J., and Kannan, K., “Denoising Magnetic Resonance Images using Fourth Order Complex Diffusion”, in 13th International Machine Vision and Image Processing Conference, Dublin, Ireland, 2009, pp. 123-127.
Conference Abstract
I. Blockx, Verhoye, M., De Groof, G., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., von Horsten, S., and Van Der Linden, A., “Diffusion Kurtosis Imaging (DKI) reveals an early phenotype (P30) in a transgenic rat model for Huntington’s disease”, ISMRM conference proceedings, vol. 2009. p. 359, 2009.
Conference Paper
Z. Mai, Verhoye, M., Van Der Linden, A., and Sijbers, J., “Diffusion Tensor Images Upsampling: a Registration-based Approach”, in 13th International Machine Vision and Image Processing Conference, Dublin, Ireland, 2009, vol. 13, pp. 36-40.PDF icon Download paper (808.21 KB)
Journal Article
W. Van Hecke, Nagels, G., Emonds, G., Leemans, A., Sijbers, J., van Goethem, J., and Parizel, P. M., “A diffusion tensor imaging group study of the spinal cord in multiple sclerosis patients with and without T2 spinal cord lesions.”, Journal of magnetic resonance imaging : JMRI, vol. 30, no. 1, pp. 25-34, 2009.PDF icon Download paper (902.67 KB)
N. Van Camp, Blockx, I., Verhoye, M., Casteels, C., Coun, F., Leemans, A., Sijbers, J., Baekelandt, V., Van Laere, K., and Van Der Linden, A., “Diffusion tensor imaging in a rat model of Parkinson's disease after lesioning of the nigrostriatal tract.”, NMR in biomedicine, vol. 22, no. 7, pp. 697-706, 2009.
Conference Abstract
R. Delgado Y Palacios, Verhoye, M., Van Audekerke, J., Poot, D. H. J., Sijbers, J., Wiborg, O., and Van Der Linden, A., “DKI visualizes hippocampal alterations in the chronic mild stress ratmodel”, ISMRM conference proceedings, vol. 2009. p. 744, 2009.
Conference Paper
S. van der Maar, Batenburg, K. J., and Sijbers, J., “Experiences with Cell-BE and GPU for tomography”, in Embedded COmputer Systems: Architectures, Modeling, and Simulation - 9th International Workshop, SAMOS 2009 - Proceedings, 2009, pp. 298-307.
Conference Abstract
A. Leemans, Jeurissen, B., Sijbers, J., and Jones, D. K., “ExploreDTI: A Graphical Toolbox for Processing, Analyzing, and Visualizing Diffusion MR Data”, ISMRM, 17th Scientific Meeting and Exhibition. Honolulu, USA, 2009.
A. Bernat, Huysmans, T., Van Glabbeek, F., Sijbers, J., Pinho, R., and Gielen, J. L., “Exploring the Clavicle: Morphometric Differences Using a 3D Model”, AAOS Annual Meeting. Las Vegas,Nevada, 2009.PDF icon Full text (12.29 KB)
Conference Paper
B. Jeurissen, Leemans, A., Tournier, J. - D., and Sijbers, J., “Fiber Tracking on the 'Fiber Cup Phantom' using Constrained Spherical Deconvolution”, in MICCAI workshop on Diffusion Modelling and the Fiber Cup (DMFC'09), London, United Kingdom, 2009.
Journal Article
K. J. Batenburg and Sijbers, J., “Generic iterative subset algorithms for discrete tomography”, Discrete Applied Mathematics, vol. 157, pp. 438-451, 2009.PDF icon Download paper (1.41 MB)
A. Postnov, De Schutter, T. T., Sijbers, J., Karperien, M., and De Clerck, N., “Glucocorticoid-Induced Osteoporosis in Growing Mice Is Not Prevented by Simultaneous Intermittent PTH Treatment”, Calcified Tissue International, vol. 85, pp. 530-537, 2009.PDF icon Download paper (344.96 KB)
Conference Paper
K. J. Batenburg, Van Aarle, W., and Sijbers, J., “Grey Level Estimation for Discrete Tomography”, in Discrete Geometry for Computer Imaging, 2009, vol. 5810, pp. 517-529.
Conference Abstract
J. Veraart, Blockx, I., Van Hecke, W., Verhoye, M., Van Der Linden, A., and Sijbers, J., “Improved non rigid coregistration of diffusion kurtosis images by incorporating diffusion kurtosis tensor information”, Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. Antalya, Turkey, p. 36, 2009.
Thesis
W. Van Hecke, “Improved Processing for Diffusion Tensor Magnetic Resonance Images for Coregistration, Atlas Construction, and Voxel Based Analysis”, University of Antwerp, Antwerp, 2009.PDF icon Download thesis (35.03 MB)
Journal Article
A. J. den Dekker, Poot, D. H. J., Bos, R., and Sijbers, J., “Likelihood based hypothesis tests for brain activation detection from MRI data disturbed by colored noise: a simulation study”, IEEE Transactions on Medical Imaging, vol. 28, pp. 287-296, 2009.
K. J. Batenburg and Sijbers, J., “Optimal Threshold Selection for Tomogram Segmentation by Projection Distance Minimization”, IEEE Transactions on Medical Imaging, vol. 28, pp. 676-686, 2009.PDF icon Download full paper (2.51 MB)
Conference Abstract
D. H. J. Poot, den Dekker, A. J., Verhoye, M., Blockx, I., Van Audekerke, J., Van Der Linden, A., and Sijbers, J., “Optimizing the Diffusion Weighting Gradients for Diffusion-Kurtosis Imaging”, ISMRM2009 proceedings, vol. 2009. p. 1394, 2009.PDF icon Download full paper (624.88 KB)

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