Arjan den Dekker

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Journal Article
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Klein, S., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “ADEPT: Accurate Diffusion EPI with multi-contrast shoTs”, Magnetic Resonance in Medicine, vol. 89, no. 1, pp. 396-410, 2023.PDF icon Download paper (5.82 MB)
Conference Paper
J. Renders, Shafieizargar, B., Verhoye, M., De Beenhouwer, J., den Dekker, A. J., and Sijbers, J., “DELTA-MRI: Direct deformation Estimation from LongiTudinally Acquired k-space data”, in IEEE International Symposium on Biomedical Imaging, 2023.
Journal Article
J. Morez, Szczepankiewicz, F., den Dekker, A. J., Vanhevel, F., Sijbers, J., and Jeurissen, B., “Optimal experimental design and estimation for q-space trajectory imaging”, Human Brain Mapping, vol. 44, no. 4, pp. 1793-1809, 2023.PDF icon Download paper (5.87 MB)
Conference Paper
D. Giraldo, Beirinckx, Q., den Dekker, A. J., Jeurissen, B., and Sijbers, J., “Super-resolution reconstruction of multi-slice T2-w FLAIR MRI improves Multiple Sclerosis lesion segmentation”, in 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2023.
Journal Article
B. Shafieizargar, Byanju, R., Sijbers, J., Klein, S., den Dekker, A. J., and Poot, D. H. J., “Systematic review of reconstruction techniques for accelerated quantitative MRI”, Magnetic Resonance in Medicine, vol. 90, no. 3, pp. 1172-1208, 2023.PDF icon Download paper (2.91 MB)
M. Siqueira Pinto, Winzeck, S., Kornaropoulos, E. N., Richter, S., Paolella, R., Correia, M. M., Glocker, B., Williams, G., Vik, A., Posti, J., Håberg, A. Kristine, Stenberg, J., Guns, P. - J., den Dekker, A. J., Menon, D. K., Sijbers, J., Van Dyck, P., and Newcombe, V. F. J., “Use of support vector machines approach via ComBat harmonized diffusion tensor imaging for the diagnosis and prognosis of mild traumatic brain injury: a CENTER-TBI study”, Journal of Neurotrauma, vol. 40, no. 13-14, pp. 1317-1338, 2023.
V. Anania, Collier, Q., Veraart, J., Buikema, A. Eline, Vanhevel, F., Billiet, T., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model”, NeuroImage, vol. 256, p. 119219, 2022.
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping”, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
Conference Abstract
V. Anania, Jeurissen, B., Morez, J., Buikema, A. Eline, Billiet, T., Sijbers, J., and den Dekker, A. J., “Optimal acquisition settings for simultaneous diffusion kurtosis, free water fraction and T2 estimation”, Joint Annual Meeting ISMRM-ESMRMB. 2022.
Journal Article
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging”, Frontiers in Neuroscience, pp. 1-18, 2022.PDF icon Download paper (5.96 MB)
Conference Abstract
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Accelerated multi-shot diffusion weighted imaging with joint estimation of diffusion and phase parameters”, Magn Reson Mater Phy, vol. 34. pp. S57-S58, 2021.
Book Chapter
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter Eight - General conclusions and future perspectives”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter Five - Optimal experiment design for nanoparticle atom counting from ADF STEM images”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter Four - Atom counting”, in Advances in Imaging and Electron Physics,, vol. 217, Science Direct Elsevier, 2021.
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter One - Introduction”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
J. Fatermans, De Backer, A., den Dekker, A. J., and Van Aert, S., “Chapter Seven - Image-quality evaluation and model selection with maximum a posteriori probability”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
J. Fatermans, De Backer, A., den Dekker, A. J., and Van Aert, S., “Chapter Six - Atom column detection”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter Three - Efficient fitting algorithm”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
A. De Backer, Fatermans, J., den Dekker, A. J., and Van Aert, S., “Chapter Two - Statistical parameter estimation theory: principles and simulation studies”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
Conference Paper
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “Comparison of MR acquisition strategies for super-resolution reconstruction using the Bayesian Mean Squared Error”, in International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2021.
Conference Abstract
C. Smekens, Beirinckx, Q., Vanhevel, F., Van Dyck, P., den Dekker, A. J., Sijbers, J., Janssens, T., and Jeurissen, B., “High-resolution T2* mapping of the knee based on UTE Spiral VIBE MRI”, Magn Reson Mater Phy, vol. 34. pp. S53-S54, 2021.
Conference Paper
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., den Dekker, A. J., and Sijbers, J., “Multi-contrast multi-shot EPI for accelerated diffusion MRI”, in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2021, pp. 3869-3872.
Conference Abstract
V. Anania, Jeurissen, B., Morez, J., Buikema, A. Eline, Billiet, T., Sijbers, J., and den Dekker, A. J., “Optimal experimental design for the T2-weighted diffusion kurtosis imaging free water elimination model”, ESMRMB 2021 Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy, vol. 34. pp. S54-S55, 2021.
M. Siqueira Pinto, Winzeck, S., Correia, M. M., Kornaropoulos, E. N., Menon, D. K., Glocker, B., den Dekker, A. J., Sijbers, J., Guns, P. - J., Van Dyck, P., and Newcombe, V. F. J., “Outcome prediction in Mild Traumatic Brain Injury patients using conventional and diffusion MRI via Support Vector Machine: A CENTER-TBI study”, ISMRM & SMRT Annual Meeting. 2021.

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