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Magnetic Resonance Imaging

Magnetic resonance imaging and derived modalities.

Accurate and precise parameter estimation for diffusion magnetic resonance imaging

J. Morez, “Accurate and precise parameter estimation for diffusion magnetic resonance imaging”, 2026.

On false positive control in Fixel-Based Analysis

R. E. Smith, Christiaens, D., Jeurissen, B., Pietsch, M., Vaughan, D. N., Jackson, G., and Tournier, J. D., “On false positive control in Fixel-Based Analysis”, Proc Intl Soc Mag Reson Med, vol. 29. 2021.

dtiRIM: A recurrent inference machine for diffusion tensor estimation

E. R. Sabidussi, Klein, S., Jeurissen, B., and Poot, D. H. J., “dtiRIM: A recurrent inference machine for diffusion tensor estimation”, Proc Intl Soc Mag Reson Med 30. p. 1981, 2022.

Data-driven characterization of knee structures using non-negative matrix factorization of quantitative UTE Spiral VIBE MRI

C. Smekens, Van Dyck, P., Janssens, T., Sijbers, J., and Jeurissen, B., “Data-driven characterization of knee structures using non-negative matrix factorization of quantitative UTE Spiral VIBE MRI”, Proc. Intl. Soc. Mag. Reson. Med. 31. 2022.

Iterative model-based Rician bias correction and its application to denoising in diffusion MRI

J. - D. Tournier, Jeurissen, B., and Christiaens, D., “Iterative model-based Rician bias correction and its application to denoising in diffusion MRI”, Proc Intl Soc Mag Reson Med. p. 3795, 2023.

Fixel-based analysis of multi-shell diffusion MRI reveals white matter changes after long-duration spaceflight

B. Jeurissen, Jillings, S., Giraldo, D. L., Van Ombergen, A., Tomilovskaya, E., Pechenkova, E., Rukavishnikov, I., Petrovichev, V., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Fixel-based analysis of multi-shell diffusion MRI reveals white matter changes after long-duration spaceflight”, Proc. Intl. Soc. Mag. Reson. Med. p. 2057, 2024.

Diffusion MRI marks progressive alterations in fiber integrity in the zQ175DN mouse model of Huntington's disease

N. Vidas-Guscic, van Rijswijk, J., Van Audekerke, J., Jeurissen, B., Nnah, I., Tang, H., Muñoz-Sanjuan, I., Pustina, D., Cachope, R., Van der Linden, A., Bertoglio, D., and Verhoye, M., “Diffusion MRI marks progressive alterations in fiber integrity in the zQ175DN mouse model of Huntington's disease”, Neurobiology of Disease, vol. 193, p. 106438, 2024.

Handbook of Diffusion MR Tractography: Multishell models

J. Morez, De Luca, A., Pietsch, M., Christiaens, D., Baete, S. H., Reisert, M., and Jeurissen, B., Handbook of Diffusion MR Tractography: Multishell models. Elsevier, 2025, pp. 201 - 220.

Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography

K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.

Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition

K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.

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