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2025
C. Smekens, Beirinckx, Q., Bosmans, F., Vanhevel, F., Snoeckx, A., Sijbers, J., Jeurissen, B., Janssens, T., and Van Dyck, P., “Deep Learning-Enhanced Accelerated 2D TSE and 3D Super-Resolution Dixon TSE for Rapid Comprehensive Knee Joint Assessment”, Investigative Radiology, vol. 60, no. 3, pp. 220-233, 2025.
C. Smekens, Beirinckx, Q., Bosmans, F., Vanhevel, F., Snoeckx, A., Sijbers, J., Jeurissen, B., Janssens, T., and Van Dyck, P., “Deep Learning-Enhanced Accelerated 2D TSE and 3D Super-Resolution Dixon TSE for Rapid Comprehensive Knee Joint Assessment”, Investigative Radiology, vol. 60, no. 3, pp. 220-233, 2025.
M. Siqueira Pinto, Anania, V., Paolella, R., Smekens, C., Billiet, T., Janssens, T., den Dekker, A. J., Sijbers, J., Guns, P. - J., and Van Dyck, P., “Harmonization of diffusion MRI on healthy subjects using NeuroCombat and LongCombat: a B-Q MINDED Brain Intra-and Inter-Scanner Study”, Frontiers in Neuroscience, vol. 19, 2025.
Y. Huybrechts, De Ridder, R., Bergen, D., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Vergauwen, L., Schepers, D., Van Dijck, E., Tong, Q., Verhulst, A., De Beenhouwer, J., Sijbers, J., Hammond, C., Forlino, A., Mortier, G., Coucke, P., P Witten, E., Kwon, R. Young, Willaert, A., Hendrickx, G., and Van Hul, W., “Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget’s Disease of Bone”, Calcified Tissue International, vol. 116, no. 1, pp. 1-15, 2025.
Y. Huybrechts, De Ridder, R., Bergen, D., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Vergauwen, L., Schepers, D., Van Dijck, E., Tong, Q., Verhulst, A., De Beenhouwer, J., Sijbers, J., Hammond, C., Forlino, A., Mortier, G., Coucke, P., P Witten, E., Kwon, R. Young, Willaert, A., Hendrickx, G., and Van Hul, W., “Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget’s Disease of Bone”, Calcified Tissue International, vol. 116, no. 1, pp. 1-15, 2025.
2024
F. Danckaers, Stanković, K., Huysmans, T., Booth, B. G., and Sijbers, J., “Foot shape assessment techniques for orthotic and footwear applications: a methodological literature review”, Frontiers in Bioengineering and Biotechnology, vol. 12, pp. 1-15, 2024.PDF icon Download paper (1.99 MB)
J. Deng, Renders, J., Meenaketan, B. Linkoon P., Takalloo, S. Ebrahimi, Braeken, D., De Beenhouwer, J., and Sijbers, J., “Imaging Algorithm and Optimal Measurement Protocol for 3D Impedance Tomography on 2D High Density Micro Electrode Array”, IEEE Sensors, vol. 24, no. 15, pp. 24452-24465, 2024.
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
B. Koirala, Rasti, B., Bnoulkacem, Z., and Scheunders, P., “Nonlinear Spectral Unmixing Using Bézier Surfaces”, IEEE Transactions on Geoscience and Remote Sensing, vol. 62, pp. 1-16, 2024.PDF icon Download paper (9.66 MB)
2023
B. Koirala, Rasti, B., Bnoulkacem, Z., Ribeiro, A. De Lima, Madriz, Y., Herrmann, E., Gestels, A., De Kerf, T., Lorenz, S., Fuchs, M., Janssens, K., Steenackers, G., Gloaguen, R., and Scheunders, P., “A Multisensor Hyperspectral Benchmark Dataset For Unmixing of Intimate Mixtures”, IEEE Sensors Journal, 2023.PDF icon a_multisensor_hyperspectral_benchmark_dataset_for_unmixing_of_intimate_mixtures_1_.pdf (22.13 MB)
B. Shafieizargar, Byanju, R., Sijbers, J., Klein, S., den Dekker, A. J., and Poot, D. H. J., “Systematic review of reconstruction techniques for accelerated quantitative MRI”, Magnetic Resonance in Medicine, vol. 90, no. 3, pp. 1172-1208, 2023.PDF icon Download paper (2.91 MB)
M. Vandecasteele, Heylen, R., Iuso, D., Thanki, A., Philips, W., Witvrouw, A., Verhees, D., and Booth, B. G., “Towards material and process agnostic features for the classification of pore types in metal additive manufacturing”, Materials & Design, vol. 227, p. 111757, 2023.
P. Lopes, Van Herck, P., Verhoelst, E., Wirix-Speetjens, R., Sijbers, J., Bosmans, J., and Vander Sloten, J., “Using particle systems for mitral valve segmentation from 3D transoesophageal echocardiography (3D TOE) - a proof of concept”, Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, vol. 11, no. 1, pp. 112-120, 2023.
2022
R. Heylen, Thanki, A., Verhees, D., Iuso, D., De Beenhouwer, J., Sijbers, J., Witvrouw, A., Haitjema, H., and Bey-Temsamani, A., “3D total variation denoising in X-CT imaging applied to pore extraction in additively manufactured parts”, Measurement Science and Technology, vol. 33, no. 4, pp. 1-12, 2022.
P. Lopes, Van Herck, P., Ooms, J., Van Mieghem, N., Wirix-Speetjens, R., Sijbers, J., Vander Sloten, J., and Bosmans, J., “Automated Mitral Valve Assessment for Transcatheter Mitral Valve Replacement (TMVR) Planning”, Frontiers in Bioengineering and Biotechnology, vol. 16, pp. 1-13, 2022.PDF icon Download paper (2.19 MB)
Y. - T. Ling, Cools, S., Bogdanowicz, J., Fleischmann, C., De Beenhouwer, J., Sijbers, J., and Vandervorst, W., “A Bottom-Up Volume Reconstruction Method for Atom Probe Tomography”, Microscopy and Microanalysis, vol. 28, no. 4, pp. 1-14, 2022.
G. Barisano, Sepehrband, F., Collins, H. R., Jillings, S., Jeurissen, B., Taylor, A. J., Schoenmaekers, C., De Laet, C., Rukavishnikov, I., Nosikova, I., Rumshiskaya, A., Annen, J., Sijbers, J., Laureys, S. S. L., Van Ombergen, A., Petrovichev, V., Sinitsyn, V., Pechenkova, E. V., Grishin, A., Eulenburg, Pzu, Law, M., Sunaert, S., Parizel, P. M., Tomilovskaya, E., Roberts, D., and Wuyts, F. L., “The effect of prolonged Spaceflight on Cerebrospinal Fluid and Perivascular Spaces of Astronauts and Cosmonauts”, PNAS, vol. 119, no. 17, 2022.
V. Anania, Collier, Q., Veraart, J., Buikema, A. Eline, Vanhevel, F., Billiet, T., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model”, NeuroImage, vol. 256, p. 119219, 2022.
V. Anania, Collier, Q., Veraart, J., Buikema, A. Eline, Vanhevel, F., Billiet, T., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model”, NeuroImage, vol. 256, p. 119219, 2022.
D. Giraldo, Smith, R. E., Struyfs, H., Niemantsverdriet, E., De Roeck, E., Bjerke, M., Engelborghs, S., Romero, E., Sijbers, J., and Jeurissen, B., “Investigating tissue-specific abnormalities in Alzheimer’s disease with multi-shell diffusion MRI”, Journal of Alzheimer's Disease, vol. 90, no. 4, pp. 1771-1791, 2022.
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping”, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
M. Shahrimie Asaari, Mertens, S., Verbraeken, L., Dhondt, S., Inze, D., Bikram, K., and Scheunders, P., “Non-destructive analysis of plant physiological traits using hyperspectral imaging: A case study on drought stress”, Computers and Electronics in Agriculture, vol. 195, p. 106806, 2022.PDF icon non-destructive_analysis_of_plant_physiological_traits_using_hyperspectral.pdf (5.53 MB)
Y. Huybrechts, De Ridder, R., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Schepers, D., De Beenhouwer, J., Sijbers, J., Forlino, A., Coucke, P., P. Witten, E., Kwon, R., Willaert, A., Hendrickx, G., and Van Hul, W., “The sqstm1tmΔUBA zebrafish model, a proof-of-concept in vivo model for Paget’s disease of bone?”, Bone Reports, vol. 16, no. 101483, pp. 75-76, 2022.
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging”, Frontiers in Neuroscience, pp. 1-18, 2022.PDF icon Download paper (5.96 MB)

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