Publications

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2025
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “Enhancing AdAPTS: Fast Field Evaporation Simulation with Parametric Local Electrodes for Atom Probe Tomography”, APT&M. 2025.
2024
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “AdAPTS: An Adaptive Atom Probe Tomography Simulation Library”, Microscopy and Microanalysis, vol. 30, no. 1. 2024.
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “AdAPTS: An Adaptive Atom Probe Tomography Simulation Library”, APT User Meeting. 2024.
B. Jeurissen, Jillings, S., Giraldo, D. L., Van Ombergen, A., Tomilovskaya, E., Pechenkova, E., Rukavishnikov, I., Petrovichev, V., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Fixel-based analysis of multi-shell diffusion MRI reveals white matter changes after long-duration spaceflight”, Proc. Intl. Soc. Mag. Reson. Med. p. 2057, 2024.
A. - T. Nguyen, Renders, J., Sijbers, J., and De Beenhouwer, J., “Reconstruction with rigid motion correction technique in CT imaging: A simulation and application study”, Workshop on Scientific Computing and Applications. Vietnam Institute for Advanced Study in Mathematics (VIASM), Hanoi, Vietnam, 2024.PDF icon wsca2024.pdf (110.08 KB)PDF icon wsca2024_slides.pdf (2.75 MB)
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “Simulating Atom Probe Tomography Using MFEM”, MFEM Community Workshop. 2024.
F. Schmidt, Koirala, B., and Andrieu, F., “Validation of abundance determination of granular mixture using radiative transfer and Bayesian MCMC”, EPSC2024. 2024.PDF icon exhibit_17_validation_of_abundance_determination_of_granular_mixture_using_radiative_transfer_and_bayesian_mcmc.pdf (977.09 KB)
2023
C. Smekens, Vanhevel, F., Beirinckx, Q., Janssens, T., and Van Dyck, P., “Accelerated Dual-contrast Three-dimensional Knee Magnetic Resonance Imaging Using Super-resolution Reconstructed Deep Learning-enhanced Two-dimensional Dixon Turbo Spin-echo Imaging”, Seminars in Musculoskeletal Radiology, vol. 27, no. S01. Thieme Medical Publishers, Inc., pp. 1-24, 2023.
H. Khan, Giraldo, D., Beirinckx, Q., Sijbers, J., Lambin, P., Woodruff, H. C., and Peeters, L. M., “Exploring the Correlation between Disability Status and Brain Volumetric Measurements Using Real-World Retrospective Magnetic Resonance Images in People with Multiple Sclerosis”, Proceedings of the 9th Joint European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) - Americas Committee for Treatment and Research in Multiple Sclerosis (ACTRIMS) Meeting. October 11-13, Milan, Italy, 2023.
J. - D. Tournier, Jeurissen, B., and Christiaens, D., “Iterative model-based Rician bias correction and its application to denoising in diffusion MRI”, Proc Intl Soc Mag Reson Med. p. 3795, 2023.
2022
J. Merckx, van Lith, B., Sijbers, J., and De Beenhouwer, J., “Adaptive triangular mesh for phase contrast imaging”, 5th international Conference on Tomography of Materials & Structures, 27the June - 1ste July, Grenoble, France. 2022.
C. Smekens, Van Dyck, P., Janssens, T., Sijbers, J., and Jeurissen, B., “Data-driven characterization of knee structures using non-negative matrix factorization of quantitative UTE Spiral VIBE MRI”, Proc. Intl. Soc. Mag. Reson. Med. 31. 2022.
E. R. Sabidussi, Klein, S., Jeurissen, B., and Poot, D. H. J., “dtiRIM: A recurrent inference machine for diffusion tensor estimation”, Proc Intl Soc Mag Reson Med 30. p. 1981, 2022.
N. Francken, Paramonov, P., Sijbers, J., and De Beenhouwer, J., “Edge Illumination Phase Contrast Simulations Using the OptiX GPU Ray Tracing Engine”, 5th International Conference on Tomography of Materials & Structures (ICTMS). 2022.
V. Anania, Jeurissen, B., Morez, J., Buikema, A. Eline, Billiet, T., Sijbers, J., and den Dekker, A. J., “Optimal acquisition settings for simultaneous diffusion kurtosis, free water fraction and T2 estimation”, Joint Annual Meeting ISMRM-ESMRMB. 2022.
C. Bossuyt, De Beenhouwer, J., and Sijbers, J., “Sparse view rectangular X-ray CT for cargo inspection using the ASTRA toolbox”, 5th international Conference on Tomography of Materials & Structures, 27the June - 1ste July, Grenoble, France. 2022.
2021
S. Hosseinnejad, Bosch, E. G. T., Kohr, H., Lazić, I., Zharinov, V., Franken, E., Sijbers, J., and De Beenhouwer, J., “3D atomic resolution tomography from iDPC-STEM images using multiple atom model prior”, Microscopy Conference. 2021.PDF icon Download abstract (534.35 KB)
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Accelerated multi-shot diffusion weighted imaging with joint estimation of diffusion and phase parameters”, Magn Reson Mater Phy, vol. 34. pp. S57-S58, 2021.
R. Paolella, de la Rosa, E., Sima, D. M., Dive, D., Durand-Dubief, F., Sappey-Marinier, D., Jeurissen, B., Sijbers, J., and Billiet, T., “Decoding Multiple Sclerosis EDSS disability scores from MRI using Deep Learning”, 38th Annual Scientific Meeting Congress of the European Society for Magnetic Resonance in Medicine and Biology, vol. 34. pp. S57-S58, 2021.
M. A. Zampini, Sijbers, J., Verhoye, M., and Garipov, R., “EPIFANI for ultrafast B1-corrected T1 and PD mapping”, Magn Reson Mater Phy, vol. 34. pp. S59-S60, 2021.
R. E. Smith, Christiaens, D., Jeurissen, B., Pietsch, M., Vaughan, D. N., Jackson, G., and Tournier, J. D., “On false positive control in Fixel-Based Analysis”, Proc Intl Soc Mag Reson Med, vol. 29. 2021.
M. Naeyaert, Golkov, V., Cremers, D., Sijbers, J., and Verhoye, M., “Faster and better HARDI using FSE and holistic reconstruction”, International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting. 2021.
C. Smekens, Beirinckx, Q., Vanhevel, F., Van Dyck, P., den Dekker, A. J., Sijbers, J., Janssens, T., and Jeurissen, B., “High-resolution T2* mapping of the knee based on UTE Spiral VIBE MRI”, Magn Reson Mater Phy, vol. 34. pp. S53-S54, 2021.
J. Renders, Nguyen, A. - T., De Beenhouwer, J., and Sijbers, J., “Motion compensating X-ray micro-CT of diamonds in a processing stage”, 31st International Conference on Diamond and Carbon Materials. 2021.PDF icon Download poster (1.04 MB)
V. Anania, Jeurissen, B., Morez, J., Buikema, A. Eline, Billiet, T., Sijbers, J., and den Dekker, A. J., “Optimal experimental design for the T2-weighted diffusion kurtosis imaging free water elimination model”, ESMRMB 2021 Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy, vol. 34. pp. S54-S55, 2021.

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