Publications

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2020
Q. Beirinckx, Ramos-Llordén, G., Jeurissen, B., Poot, D. H. J., Parizel, P. M., Verhoye, M., Sijbers, J., and den Dekker, A. J., “Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study”, Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.
2019
M. Naeyaert, Roose, D., Mai, Z., Keliris, A. J., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Normalized Averaged Range (nAR), a Robust Quantification Method for MPIO-content”, Journal of Magnetic Resonance, vol. 300, pp. 18-27, 2019.
Q. Beirinckx, Jeurissen, B., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Super-resolution T1 mapping with integrated motion compensation in a joint maximum likelihood framework”, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
2018
J. Praet, Manyakov, N., Muchene, L., Mai, Z., Terzopoulos, V., De Backer, S., Torremans, A., Guns, P. - J., Van De Casteele, T., Bottelbergs, A., Van Broeck, B., Sijbers, J., Smeets, D., Shkedy, Z., Bijnens, L., Pemberton, D., Schmidt, M., Van Der Linden, A., and Verhoye, M., “Diffusion kurtosis imaging allows the early detection and longitudinal follow-up of amyloid β-induced pathology.”, Alzheimer's Research & Therapy , vol. 10, no. 1, pp. 1-16, 2018.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
2017
J. Hamaide, De Groof, G., Van Steenkiste, G., Jeurissen, B., Van Audekerke, J., Naeyaert, M., Van Ruijssevelt, L., Cornil, C., Sijbers, J., Verhoye, M., and Van Der Linden, A., “ Exploring sex differences in the adult zebra finch brain: In vivo diffusion tensor imaging and ex vivo super-resolution track density imaging”, NeuroImage, vol. 146, pp. 789-803, 2017.
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Jeurissen, B., Vanhevel, F., Van Audekerke, J., Verhoye, M., and Sijbers, J., “A unified Maximum Likelihood framework for simultaneous motion and T1 estimation in quantitative MR T1 mapping”, IEEE Transactions on Medical Imaging, vol. 36, no. 2, pp. 433 - 446, 2017.
2016
C. Guglielmetti, Veraart, J., Roelant, E., Mai, Z., Daans, J., Van Audekerke, J., Naeyaert, M., Vanhoutte, G., Delgado Y Palacios, R., Praet, J., Fieremans, E., Ponsaerts, P., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone-induced demyelination and spontaneous remyelination”, NeuroImage, vol. 125, pp. 363–377, 2016.
G. Ramos-Llordén, den Dekker, A. J., Björk, M., Verhoye, M., and Sijbers, J., “NOVIFAST: A fast non-linear least squares method for accurate and precise estimation of T1 from SPGR signals”, 24th Annual Meeting of the ISMRM, Singapore. 2016.
2015
G. Van Steenkiste, Hamaide, J., Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Sijbers, J., and Verhoye, M., “Combination of super-resolution reconstruction diffusion tensor imaging and track density imaging reveals song control system connectivity in zebra finches”, ISMRM 23th Annual Meeting, Toronto, Ontario, Canada, vol. 23. p. 2861, 2015.PDF icon Download abstract (108.98 KB)
C. Guglielmetti, Veraart, J., Roelant, E., Mai, Z., Daans, J., Van Audekerke, J., Praet, J., Ponsaerts, P., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone-induced demyelination and spontaneous remyelination”, ISMRM 23th Annual Meeting, Toronto, Ontario, Canada, vol. 23. 2015.PDF icon Download abstract (866.27 KB)
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Simultaneous group-wise rigid registration and T1 ML estimation for T1 mapping”, 23rd Annual meeting of the ISMRM, Toronto, Canada., vol. 23. p. 447, 2015.PDF icon Download abstract (910.6 KB)
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Simultaneous group-wise rigid registration and T1 ML estimation for T1 mapping”, 7th meeting of the ISMRM Benelux Chapter, Gent, Belgium, January. 2015.
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Simultaneous motion correction and T1 estimation in quantitative T1 mapping: An ML restoration approach”, in 2015 IEEE International Conference on Image Processing (ICIP), 2015, pp. 3160-3164.
G. Van Steenkiste, Hamaide, J., Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Sijbers, J., and Verhoye, M., “Super-resolution structural connectivity and anatomy of the zebra finch brain ”, ISMRM Benelux. 2015.
2013
G. Vanhoutte, Pereson, S., Delgado Y Palacios, R., Guns, P. - J., Asselbergh, B., Veraart, J., Sijbers, J., Verhoye, M., Van Broeckhoven, C., and Van Der Linden, A., “Diffusion kurtosis imaging to detect amyloidosis in an APP/PS1 mouse model for Alzheimer's disease”, Magnetic Resonance in Medicine, vol. 69, no. 4, pp. 1115–1121, 2013.
S. Sekar, Jonckers, E., Verhoye, M., Willems, R., Veraart, J., Van Audekerke, J., Couto, J., Giugliano, M., Wuyts, K., Dedeurwaerdere, S., Sijbers, J., Mackie, C., Ver Donck, L., Steckler, T., and Van Der Linden, A., “Subchronic memantine induced concurrent functional disconnectivity and altered ultra-structural tissue integrity in the rodent brain: revealed by multimodal MRI.”, Psychopharmacology, vol. 227, no. 3, pp. 479-91, 2013.
2012
J. Rajan, Van Audekerke, J., Van Der Linden, A., Verhoye, M., and Sijbers, J., “An adaptive non local maximum likelihood estimation method for denoising magnetic resonance images”, in IEEE International Symposium on Biomedical Imaging (ISBI), 2012.PDF icon Download full paper (307.46 KB)
N. Van Camp, Blockx, I., Camon, L., de Vera, N., Verhoye, M., Veraart, J., Van Hecke, W., Martinez, E., Guadelupe, S., Sijbers, J., Planas, A., and Van Der Linden, A., “A complementary DTI-histological study in a model of Huntingtons disease”, Neurobiology of Aging, vol. 33, pp. 945-959, 2012.
I. Blockx, Verhoye, M., Van Audekerke, J., Bergwerf, I., Kane, J. X., Delgado Y Palacios, R., Veraart, J., Jeurissen, B., Raber, K., Von Hörsten, S., Ponsaerts, P., Sijbers, J., Leergaard, T. B., and Van Der Linden, A., “Identification and characterization of Huntington related pathology: an in vivo DKI imaging study”, NeuroImage, vol. 63, no. 2, pp. 653-662, 2012.
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., “Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.”, NeuroImage, vol. 59, pp. 957-67, 2012.
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images”, Magnetic Resonance Imaging, vol. 30, no. 10, pp. 1512-1518, 2012.PDF icon Download full paper (1.11 MB)
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images.”, Magnetic resonance imaging, vol. 30, no. 10, pp. 1512-8, 2012.
M. Naeyaert, Aelterman, J., Van Audekerke, J., Claes, K., Van Der Linden, A., Sijbers, J., and Verhoye, M., “Optimization of Compressed Sensing/RARE Combining Acquisition Schemes”, European Society for Magnetic Resonance in Medicine and Biology, vol. 25, no. 1. pp. 513-514, 2012.
2011
Z. Mai, Hanel, R., Batenburg, K. J., Verhoye, M., Scheunders, P., and Sijbers, J., “Bias field reduction by localized Lloyd-Max quantization”, Magnetic Resonance Imaging, vol. 29, no. 4, pp. 536-545, 2011.

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