Publications

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2022
G. Barisano, Sepehrband, F., Collins, H. R., Jillings, S., Jeurissen, B., Taylor, A. J., Schoenmaekers, C., De Laet, C., Rukavishnikov, I., Nosikova, I., Rumshiskaya, A., Annen, J., Sijbers, J., Laureys, S. S. L., Van Ombergen, A., Petrovichev, V., Sinitsyn, V., Pechenkova, E. V., Grishin, A., Eulenburg, Pzu, Law, M., Sunaert, S., Parizel, P. M., Tomilovskaya, E., Roberts, D., and Wuyts, F. L., “The effect of prolonged Spaceflight on Cerebrospinal Fluid and Perivascular Spaces of Astronauts and Cosmonauts”, PNAS, vol. 119, no. 17, 2022.
Y. Huybrechts, De Ridder, R., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Schepers, D., De Beenhouwer, J., Sijbers, J., Forlino, A., Coucke, P., P. Witten, E., Kwon, R., Willaert, A., Hendrickx, G., and Van Hul, W., “The sqstm1tmΔUBA zebrafish model, a proof-of-concept in vivo model for Paget’s disease of bone?”, Bone Reports, vol. 16, no. 101483, pp. 75-76, 2022.
Y. Huybrechts, De Ridder, R., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Schepers, D., De Beenhouwer, J., Sijbers, J., Forlino, A., Coucke, P., P. Witten, E., Kwon, R., Willaert, A., Hendrickx, G., and Van Hul, W., “The sqstm1tmΔUBA zebrafish model, a proof-of-concept in vivo model for Paget’s disease of bone?”, Bone Reports, vol. 16, no. 101483, pp. 75-76, 2022.
2021
A. De Luca, Ianus, A., Leemans, A., Palombo, M., Shemesh, N., Zhang, H., Alexander, D. C., Nilsson, M., Froeling, M., Biessels, G. - J., Zucchelli, M., Frigo, M., Albay, E., Sedlar, S., Alimi, A., Deslauriers-Gauthier, S., Deriche, R., Fick, R., Afzali, M., Pieciak, T., Bogusz, F., Aja-Fernandez, S., Ozarslan, E., Jones, D. K., Chen, H., Jin, M., Zhang, Z., Wang, F., Nath, V., Parvathaneni, P., Morez, J., Sijbers, J., Jeurissen, B., Shreyas,, Fadnavis,, Endres, S., Rokem, A., Garyfallidis, E., Sanchez, I., Prchkovska, V., Rodrigues, P., Landman, B. A., and Schilling, K. G., “On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: chronicles of the MEMENTO challenge”, NeuroImage, vol. 240, no. 118367, 2021.
2020
S. Jillings, Van Ombergen, A., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., Kozlovskaya, I. B., Manko, O., Danilichev, S., Sunaert, S., Parizel, P. M., Sinitsyn, V., Petrovichev, V., Laureys, S., Eulenburg, Pzu, Sijbers, J., Wuyts, F. L., and Jeurissen, B., “Macro- and microstructural changes in cosmonauts’ brains after long-duration spaceflight”, Science Advances, vol. 6, no. 36, p. eaaz9488, 2020.PDF icon Download paper (942.53 KB)
2019
E. Pechenkova, Nosikova, I., Rumshiskaya, A., Litvinova, L., Rukavishnikov, I., Mershina, E., Sinitsyn, V., Van Ombergen, A., Jeurissen, B., Jillings, S., Laureys, S., Sijbers, J., Grishin, A., Chernikova, L., Naumov, I., Kornilova, L., Wuyts, F. L., Tomilovskaya, E., and Kozlovskaya, I., “Alterations of Functional Brain Connectivity After Long-Duration Spaceflight as Revealed by fMRI.”, Front Physiol, vol. 10, no. 761, pp. 1-23, 2019.
M. Shahrimie Asaari, Mertens, S., Dhondt, S., Inze, D., Wuyts, N., and Scheunders, P., “Analysis of hyperspectral images for detection of drought stress and recovery in maize plants in a high-throughput phenotyping platform”, Computers and Electronics in Agriculture, vol. 162, pp. 749-758, 2019.PDF icon shahrimie_2019.pdf (3.12 MB)
A. Van Ombergen, Jillings, S., Jeurissen, B., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E. V., Rukavishnikov, I., Manko, O., Danylichev, S., R. Rühl, M., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Sinitsyn, V., Laureys, S. S. L., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Brain ventricular volume changes induced by long-duration spaceflight”, Proceedings of the National Academy of Sciences, vol. 116, no. 21, pp. 10531-10536, 2019.
B. Fröhler, Elberfeld, T., Möller, T., Weissenböck, J., De Beenhouwer, J., Sijbers, J., Hege, H. - C., Kastner, J., and Heinzl, C., “A Visual Tool for the Analysis of Algorithms for Tomographic Fiber Reconstruction in Materials Science”, Computer Graphics Forum, vol. 38, no. 3, pp. 273-283, 2019.
2018
A. Van Ombergen, Jillings, S., Jeurissen, B., Tomilovskaya, E., Rühl, M., Rumshiskaya, A., Nosikova, I., Litvinova, L., Annen, J., Pechenkova, E. V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Sinitsyn, V., Laureys, S. S. L., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Brain Tissue–Volume Changes in Cosmonauts”, New England Journal of Medicine, vol. 379, no. 17, pp. 1678 - 1680, 2018.
M. Shahrimie Asaari, Mishra, P., Mertens, S., Dhondt, S., Inze, D., Wuyts, N., and Scheunders, P., “Close-range hyperspectral image analysis for the early detection of plant stress responses in individual plants in a high-throughput phenotyping platform”, ISPRS Journal of Photogrammetry and Remote Sensing , vol. 138, pp. 121-138, 2018.
G. Liu, Nath, T., Guo, Z., Linneweber, G., Claeys, A., Li, J., Bengochea, M., De Backer, S., Weyn, B., Sneyders, M., Nicasy, H., Yu, P., Scheunders, P., and Hassan, B., “A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila”, Plos Computational Biology, vol. 14, no. 8, p. e1006410, 2018.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
F. De Carlo, Gursoy, D., Ching, D., Batenburg, K. J., Ludwig, W., Mancini, L., Welford, F. M., Mokso, R., Pelt, D., Sijbers, J., and Rivers, M., “TomoBank: A Tomographic Data Repository for Computational X-ray Science”, Measurement Science and Technology, vol. 29, no. 3, pp. 1-10, 2018.PDF icon Download paper (5.71 MB)
2017
A. Van Ombergen, Heine, L., Jillings, S., Roberts, E., Jeurissen, B., Van Rompaey, V., Mucci, V., Vanhecke, S., Sijbers, J., Vanhevel, F., Sunaert, S., Bahri, M. Ali, Parizel, P. M., Van de Heyning, P. H., Laureys, S. S. L., and Wuyts, F. L., “Altered functional brain connectivity in patients with visually induced dizziness”, NeuroImage: Clinical, vol. 14, pp. 538–545, 2017.
A. Van Ombergen, Demertzi, A., Tomilovskaya, E., Jeurissen, B., Sijbers, J., Kozlovskaya, I. B., Parizel, P. M., Van de Heyning, P. H., Sunaert, S., Laureys, S. S. L., and Wuyts, F. L., “The effect of spaceflight and microgravity on the human brain”, Journal of Neurology, vol. 246, no. 1, pp. 18-22, 2017.
A. Van Ombergen, Wuyts, F. L., Jeurissen, B., Sijbers, J., Vanhevel, F., Jillings, S., Parizel, P. M., Sunaert, S., Van de Heyning, P. H., Dousset, V., Laureys, S. S. L., and Demertzi, A., “Intrinsic connectivity reduces in vestibular-related regions after first-time exposure to short-term gravitational alterations”, Scientific Reports, vol. 7, no. 3061, 2017.PDF icon Download paper (3.47 MB)
2016
W. R. Crum, Danckaers, F., Huysmans, T., Cotel, M. - C., Natesan, S., Modo, M. M., Sijbers, J., Williams, S. C. R., Kapur, S., and Vernon, A. C., “Chronic exposure to haloperidol and olanzapine leads to common and divergent shape changes in the rat hippocampus in the absence of grey-matter volume loss”, Psychological Medicine, vol. 46, no. 15, pp. 3081-3093, 2016.
A. Demertzi, Van Ombergen, A., Tomilovskaya, E., Jeurissen, B., Pechenkova, E. V., Di Perri, C., Litvinova, L., Amico, E., Rumshiskaya, A., Rukavishnikov, I., Sijbers, J., Sinitsyn, V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Van de Heyning, P. H., Laureys, S. S. L., and Wuyts, F. L., “Cortical reorganization in an astronaut’s brain after long-duration spaceflight”, Brain Structure and Function, vol. 221, no. 5, pp. 2873–2876, 2016.PDF icon Download paper (820.49 KB)
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., de Nijs, B., van Huis, M. A., Sánchez-Iglesias, A., Liz-Marzán, L. M., van Blaaderen, A., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies.”, Nanoscale, vol. 8, no. 1, pp. 292-9, 2016.
2015
D. Kazantsev, Thompson, W. M., Lionheart, W. R. B., Van Eyndhoven, G., Kaestner, A. P., Dobson, K. J., Withers, P. J., and Lee, P. D., “4D-CT reconstruction with unified spatial-temporal patch-based regularization”, Inverse Problems and Imaging, vol. 9, no. 2, pp. 447-467, 2015.
H. Struyfs, Van Hecke, W., Veraart, J., Sijbers, J., Slaets, S., De Belder, M., Wuyts, L., Peters, B., Sleegers, K., Robberecht, C., Van Broeckhoven, C., De Belder, F., Parizel, P. M., and Engelborghs, S., “Diffusion Kurtosis Imaging: a possible MRI biomarker for AD diagnosis?”, Journal of Alzheimer’s Disease, vol. 48, pp. 937-948, 2015.PDF icon Download paper (374.95 KB)
D. Kazantsev, Van Eyndhoven, G., Lionheart, W. R. B., Withers, P. J., Dobson, K. J., McDonald, S. A., Atwood, R., and Lee, P. D., “Employing temporal self-similarity across the entire time domain in computed tomography reconstruction”, Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences, vol. 373, 2015.
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., van Nijs, B., van Huis, M. A., van Blaaderen, A., Sánchez-Iglesias, A., Liz-Marzán, L. M., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies”, Nanoscale, vol. 8, no. 1, pp. 292-299, 2015.

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