Publications

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2025
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.
I. O. Jelescu, Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Schilling, K. G., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507 - 2534, 2025.
2024
J. Sijbers, Danckaers, F., and Osstyn, J., “Methods and systems for determining an anatomical reconstruction of a broken bone”, 2024.
J. Osstyn, Danckaers, F., Verstreken, A., Van Haver, A., Vanhees, M., and Sijbers, J., “Statistical shape model guided virtual reduction of displaced distal radius fractures”, in IEEE International Symposium on Biomedical Imaging, Athens, Greece, 2024, pp. 1-5.
2023
J. Osstyn, Danckaers, F., Van Haver, A., Oramas, J., Vanhees, M., and Sijbers, J., “Automated virtual reduction of displaced distal radius fractures”, in IEEE International Symposium on Biomedical Imaging, Cartagena, Colombia, 2023, pp. 1-4.
J. Osstyn, Danckaers, F., Van Haver, A., Oramas, J., Vanhees, M., and Sijbers, J., “Automated virtual reduction of displaced distal radius fractures”, in IEEE International Symposium on Biomedical Imaging, Cartagena, Colombia, 2023, pp. 1-4.
G. A. Pabon Ochoa, Giraldo, D., and Romero, E., “Exploring anatomical brain heterogeneity in subjects with mild cognitive impairment”, in 2023 19th International Symposium on Medical Information Processing and Analysis (SIPAIM), 2023, pp. 1-5.
2022
P. Lopes, Van Herck, P., Ooms, J., Van Mieghem, N., Wirix-Speetjens, R., Sijbers, J., Vander Sloten, J., and Bosmans, J., “Automated Mitral Valve Assessment for Transcatheter Mitral Valve Replacement (TMVR) Planning”, Frontiers in Bioengineering and Biotechnology, vol. 16, pp. 1-13, 2022.PDF icon Download paper (2.19 MB)
A. Doroshin, Jillings, S., Jeurissen, B., Tomilovskaya, E., Pechenkova, E. V., Nosikova, I., Rumshiskaya, A., Litvinova, L., Rukavishnikov, I., De Laet, C., Schoenmaekers, C., Sijbers, J., Laureys, S. S. L., Petrovichev, V., Van Ombergen, A., Annen, J., Sunaert, S., Parizel, P. M., Sinitsyn, V., Eulenburg, Pzu, Osipowicz, K., and Wuyts, F. L., “Brain Connectometry Changes in Space Travelers After Long-Duration Spaceflight”, Front. Neural Circuits, vol. 16, 2022.
2021
A. De Luca, Ianus, A., Leemans, A., Palombo, M., Shemesh, N., Zhang, H., Alexander, D. C., Nilsson, M., Froeling, M., Biessels, G. - J., Zucchelli, M., Frigo, M., Albay, E., Sedlar, S., Alimi, A., Deslauriers-Gauthier, S., Deriche, R., Fick, R., Afzali, M., Pieciak, T., Bogusz, F., Aja-Fernandez, S., Ozarslan, E., Jones, D. K., Chen, H., Jin, M., Zhang, Z., Wang, F., Nath, V., Parvathaneni, P., Morez, J., Sijbers, J., Jeurissen, B., Shreyas,, Fadnavis,, Endres, S., Rokem, A., Garyfallidis, E., Sanchez, I., Prchkovska, V., Rodrigues, P., Landman, B. A., and Schilling, K. G., “On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: chronicles of the MEMENTO challenge”, NeuroImage, vol. 240, no. 118367, 2021.
2020
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., Friedrich, T., Lobato, I., O'Leary, C. M., Varambhia, A., Altantzis, T., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “3D Atomic Scale Quantification of Nanostructures and their Dynamics Using Model-based STEM”, Microscopy & Microanalysis 2020 (online), Milwaukee, United States. 2020.
2019
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Atom column detection from STEM images using the maximum a posteriori probability rule”, MC 2019, Berlin, Germany. 2019.
F. L. Wuyts, Jillings, S., Van Ombergen, A., Jeurissen, B., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., and others, “Novel insight on effect and recovery of long-duration spaceflight on the ventricles of the space traveller's brain”, Proceedings of the International Astronautical Congress, IAC, vol. 2019. International Astronautical Federation, p. IAC–19_A1_2_4_x51230, 2019.
2018
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., “Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials”, IMC19, Sydney, Australia. 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Single Atom Detection from Low Contrast-to-Noise Ratio Electron Microscopy Images”, Phys. Rev. Lett., vol. 121, p. 056101, 2018.
2017
M. Ouwendijk, Slingerland, N., van Nistelrooij, J., Huysmans, T., Van de Casteele, E., Van Glabbeek, F., Meermans, G., and Verstreken, F., “Screw fixation of simulated scaphoid waist fractures: a biomechanical comparison of two screw lengths.”, European Federation of National Associatinos of Orthopaedics and Traumatology (EFORT), 18th ANNUAL CONGRESS, VIENNA, AUSTRIA. 2017.
2016
M. Van Dael, Lebotsa, S., Herremans, E., Verboven, P., Sijbers, J., Opara, U. L., Cronje, U. L., and Nicolai, B., “A segmentation and classification algorithm for online detection of internal disorders in citrus using X-ray radiographs”, Postharvest Biology and Technology, vol. 112, pp. 205-214, 2016.
W. S. Oliveira, Teixeira, J. V., Tsang, I. R., Cavalcanti, G. D. C., and Sijbers, J., “Unsupervised Retinal Vessel Segmentation Using Combined Filters”, Plos One, vol. 11, pp. 1-21, 2016.
2015
N. J. Forde, O'Donoghue, S., Scanlon, C., Emsell, L., Chaddock, C., Leemans, A., Jeurissen, B., Barker, G. J., Cannon, D. M., Murray, R. M., and others, “Structural brain network analysis in families multiply affected with bipolar I disorder”, Psychiatry Research: Neuroimaging, vol. 234, pp. 44–51, 2015.
N. J. Forde, O'Donoghue, S., Scanlon, C., Emsell, L., Chaddock, C., Leemans, A., Jeurissen, B., Barker, G. J., Cannon, D. M., Murray, R. M., and others, “Structural brain network analysis in families multiply affected with bipolar I disorder”, Psychiatry Research: Neuroimaging, vol. 234, pp. 44–51, 2015.
2014
H. K. Jenssen, Oberlander, B. C., De Beenhouwer, J., Sijbers, J., and Verwerft, M., “Neutron radiography and tomography applied to fuel degradation during ramp tests and loss of coolant accident tests in a research reactor”, Progress in Nuclear Energy, vol. 72, pp. 55-62, 2014.
G. Van Eyndhoven, Batenburg, K. J., Oers, C. V., Kurttepeli, M., Bals, S., Cool, P., and Sijbers, J., “Reliable Pore-size Measurements Based on a Procedure Specifically Designed for Electron Tomography Measurements of Nanoporous Samples”, International Congress on 3D Materials Science 2014 . 2014.
N. J. Forde, Scanlon, C., Emsell, L., O'Donoghue, S., Chaddock, C., Leemans, A., Jeurissen, B., Cannon, D. M., Murray, R. M., and McDonald, C., “Structural brain network analysis in families multiply affected with bipolar 1 disorder”, International Review of Psychosis & Bipolarity. Athens, Greece, 2014.
2012
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.

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