Publications

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2018
A. Van Ombergen, Jillings, S., Jeurissen, B., Tomilovskaya, E., Rühl, M., Rumshiskaya, A., Nosikova, I., Litvinova, L., Annen, J., Pechenkova, E. V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Sinitsyn, V., Laureys, S. S. L., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Brain Tissue–Volume Changes in Cosmonauts”, New England Journal of Medicine, vol. 379, no. 17, pp. 1678 - 1680, 2018.
A. Van Ombergen, Wuyts, F. L., Jeurissen, B., Sijbers, J., Vanhevel, F., Jillings, S., Parizel, P. M., Sunaert, S., Van de Heyning, P. H., Dousset, V., Laureys, S. S. L., and Demertzi, A., “Changes in intrinsic functional brain connectivity after first-time exposure to parabolic flight”, 39th ISGP Meeting & ESA Life Sciences Meeting. 2018.
M. Shahrimie Asaari, Mishra, P., Mertens, S., Dhondt, S., Inze, D., Wuyts, N., and Scheunders, P., “Close-range hyperspectral image analysis for the early detection of plant stress responses in individual plants in a high-throughput phenotyping platform”, ISPRS Journal of Photogrammetry and Remote Sensing , vol. 138, pp. 121-138, 2018.
J. Weissenböck, Arikan, M., Salaberger, D., Kastner, J., De Beenhouwer, J., Sijbers, J., Rauchenzauner, S., Raab-Wernig, T., Gröller, E., and Heinzl, C., “Comparative Visualization of Orientation Tensors in Fiber-Reinforced Polymers”, in 8th Conference on Industrial Computed Tomography, Wels, Austria , 2018.PDF icon Download paper (1.03 MB)
M. Shahrimie Asaari, Mertens, S., Dhondt, S., Wuyts, N., and Scheunders, P., “Detection of plant responses to drought using close-range hyperspectral imaging in a high-throughput phenotyping platform”, in IEEE Whispers 2018, Workshop on Hyperspectral Image and Signal Processing, Amsterdam, 23-26 September , 2018.
G. Liu, Nath, T., Guo, Z., Linneweber, G., Claeys, A., Li, J., Bengochea, M., De Backer, S., Weyn, B., Sneyders, M., Nicasy, H., Yu, P., Scheunders, P., and Hassan, B., “A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila”, Plos Computational Biology, vol. 14, no. 8, p. e1006410, 2018.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
F. De Carlo, Gursoy, D., Ching, D., Batenburg, K. J., Ludwig, W., Mancini, L., Welford, F. M., Mokso, R., Pelt, D., Sijbers, J., and Rivers, M., “TomoBank: A Tomographic Data Repository for Computational X-ray Science”, Measurement Science and Technology, vol. 29, no. 3, pp. 1-10, 2018.PDF icon Download paper (5.71 MB)
2017
A. Van Ombergen, Heine, L., Jillings, S., Roberts, E., Jeurissen, B., Van Rompaey, V., Mucci, V., Vanhecke, S., Sijbers, J., Vanhevel, F., Sunaert, S., Bahri, M. Ali, Parizel, P. M., Van de Heyning, P. H., Laureys, S. S. L., and Wuyts, F. L., “Altered functional brain connectivity in patients with visually induced dizziness”, NeuroImage: Clinical, vol. 14, pp. 538–545, 2017.
A. Van Ombergen, Demertzi, A., Tomilovskaya, E., Jeurissen, B., Sijbers, J., Kozlovskaya, I. B., Parizel, P. M., Van de Heyning, P. H., Sunaert, S., Laureys, S. S. L., and Wuyts, F. L., “The effect of spaceflight and microgravity on the human brain”, Journal of Neurology, vol. 246, no. 1, pp. 18-22, 2017.
A. Van Ombergen, Wuyts, F. L., Jeurissen, B., Sijbers, J., Vanhevel, F., Jillings, S., Parizel, P. M., Sunaert, S., Van de Heyning, P. H., Dousset, V., Laureys, S. S. L., and Demertzi, A., “Intrinsic connectivity reduces in vestibular-related regions after first-time exposure to short-term gravitational alterations”, Scientific Reports, vol. 7, no. 3061, 2017.PDF icon Download paper (3.47 MB)
K. Zarei Zefreh, Welford, F. M., and Sijbers, J., “A Novel adaptive PCA Based Denoising Technique for Ultra-High-Rate Computed Tomography”, in 7th Conference on Industrial Computed Tomography (iCT 2017), Leuven (Belgium), 2017.
2016
W. R. Crum, Danckaers, F., Huysmans, T., Cotel, M. - C., Natesan, S., Modo, M. M., Sijbers, J., Williams, S. C. R., Kapur, S., and Vernon, A. C., “Chronic exposure to haloperidol and olanzapine leads to common and divergent shape changes in the rat hippocampus in the absence of grey-matter volume loss”, Psychological Medicine, vol. 46, no. 15, pp. 3081-3093, 2016.
P. Mishra, Asaari, M. Shahrimie, Mertens, S., Wuyts, N., Dhondt, S., and Scheunders, P., “Close range hyperspectral imaging for plant phenotyping”, in Hyperspectral Imaging and Applications Conference, Coventry, UK, 2016.
A. Demertzi, Van Ombergen, A., Tomilovskaya, E., Jeurissen, B., Pechenkova, E. V., Di Perri, C., Litvinova, L., Amico, E., Rumshiskaya, A., Rukavishnikov, I., Sijbers, J., Sinitsyn, V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Van de Heyning, P. H., Laureys, S. S. L., and Wuyts, F. L., “Cortical reorganization in an astronaut’s brain after long-duration spaceflight”, Brain Structure and Function, vol. 221, no. 5, pp. 2873–2876, 2016.PDF icon Download paper (820.49 KB)
K. Zarei Zefreh, De Beenhouwer, J., Welford, F. M., and Sijbers, J., “Investigation on Effect of scintillator thickness on Afterglow in Indirect X-ray Detectors”, in 6th Conference on Industrial Computed Tomography, Wels, Austria (iCT 2016), 2016.
K. Zarei Zefreh, Welford, F. M., and Sijbers, J., “Investigation on the effect of exposure time on scintillator afterglow for ultra-fast tomography acquisition”, in 18th International Workshop on Radiation Imaging Detectors, Barcelona, Spain, 2016, vol. 11, p. C12014.PDF icon Download paper (482.36 KB)
K. Zarei Zefreh, “Investigation on the effect of exposure time on scintillator afterglow for ultra-fast tomography acquisition”, Journal of Instrumentation, vol. 11, 2016.
M. Shahrimie Asaari, Mishra, P., Mertens, S., Dhondt, S., Wuyts, N., and Scheunders, P., “Modeling effects of illumination and plant geometry on leaf reflectance spectra in close-range hyperspectral imaging”, in 8th WHISPERS - Evolution in Remote Sensing, Los Angeles, USA, 2016.
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., de Nijs, B., van Huis, M. A., Sánchez-Iglesias, A., Liz-Marzán, L. M., van Blaaderen, A., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies.”, Nanoscale, vol. 8, no. 1, pp. 292-9, 2016.
Z. Wang, Rogge, S., Van Dael, M., Van Nieuwenhove, V., Verboven, P., Sijbers, J., and Nicolai, B., “Understanding microstructural deformation of apple tissue from 4D micro-CT imaging”, ISHS Symposium 2016: Sensing Plant Water Status - Methods and Applications in Horticultural Science. Potsdam, Germany, 5-7 October. 2016.
2015
D. Kazantsev, Thompson, W. M., Lionheart, W. R. B., Van Eyndhoven, G., Kaestner, A. P., Dobson, K. J., Withers, P. J., and Lee, P. D., “4D-CT reconstruction with unified spatial-temporal patch-based regularization”, Inverse Problems and Imaging, vol. 9, no. 2, pp. 447-467, 2015.
H. Struyfs, Van Hecke, W., Veraart, J., Sijbers, J., Slaets, S., De Belder, M., Wuyts, L., Peters, B., Sleegers, K., Robberecht, C., Van Broeckhoven, C., De Belder, F., Parizel, P. M., and Engelborghs, S., “Diffusion Kurtosis Imaging: a possible MRI biomarker for AD diagnosis?”, Journal of Alzheimer’s Disease, vol. 48, pp. 937-948, 2015.PDF icon Download paper (374.95 KB)
D. Kazantsev, Van Eyndhoven, G., Lionheart, W. R. B., Withers, P. J., Dobson, K. J., McDonald, S. A., Atwood, R., and Lee, P. D., “Employing temporal self-similarity across the entire time domain in computed tomography reconstruction”, Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences, vol. 373, 2015.

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