Publications

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Conference Paper
J. Sijbers, Verhoye, M., Scheunders, P., Van Der Linden, A., Van Audekerke, J., Van Dyck, D., and Raman, E., “Segmentation Scheme for Volume Quantization from 3D Microscopic MR images”, in Proceedings of the Joint Meeting NVvM & BVM, Gent, 1996, pp. 168-169.
J. Sijbers, Van Der Linden, A., Scheunders, P., Van Audekerke, J., Raman, E., and Van Dyck, D., “Semi-automatic mouse cerebellum extraction from 3D magnetic resonance data”, in Proceedings of the International Society for Magnetic Resonance in Medicine, New York, USA, 1996, vol. 3, p. 1585.
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Simultaneous motion correction and T1 estimation in quantitative T1 mapping: An ML restoration approach”, in 2015 IEEE International Conference on Image Processing (ICIP), 2015, pp. 3160-3164.
W. Pintjens, Sijbers, J., Verhoye, M., Van Audekerke, J., and Van Der Linden, A., “A total correction scheme for EPI distortions at high field”, in 22th Annual Scientific Meeting - European Society for Magnetic Resonance in Medicine and Biology, Warsaw, Poland, 2006, pp. 328-329.
J. Sijbers, Van Der Linden, A., Scheunders, P., Van Audekerke, J., Van Dyck, D., and Raman, E., “Volume quantization of the mouse cerebellum by semi-automatic 3D segmentation of MR images”, in Proceedings of SPIE Medical Imaging, Newport Beach CA, USA, 1996, vol. 2710, pp. 553-560.
Journal Article
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Klein, S., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “ADEPT: Accurate Diffusion EPI with multi-contrast shoTs”, Magnetic Resonance in Medicine, vol. 89, no. 1, pp. 396-410, 2023.PDF icon Download paper (5.82 MB)
C. Guglielmetti, Veraart, J., Roelant, E., Mai, Z., Daans, J., Van Audekerke, J., Naeyaert, M., Vanhoutte, G., Delgado Y Palacios, R., Praet, J., Fieremans, E., Ponsaerts, P., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone-induced demyelination and spontaneous remyelination”, NeuroImage, vol. 125, pp. 363–377, 2016.
J. Sijbers, den Dekker, A. J., Van Audekerke, J., Verhoye, M., and Van Dyck, D., “Estimation of the noise in magnitude MR images”, Magnetic Resonance Imaging, vol. 16, pp. 87-90, 1998.PDF icon Download paper (64.9 KB)
J. Hamaide, De Groof, G., Van Steenkiste, G., Jeurissen, B., Van Audekerke, J., Naeyaert, M., Van Ruijssevelt, L., Cornil, C., Sijbers, J., Verhoye, M., and Van Der Linden, A., “ Exploring sex differences in the adult zebra finch brain: In vivo diffusion tensor imaging and ex vivo super-resolution track density imaging”, NeuroImage, vol. 146, pp. 789-803, 2017.
T. Boumans, Vignal, C., Smolders, A., Sijbers, J., Verhoye, M., Van Audekerke, J., and Van Der Linden, A., “Functional magnetic resonance imaging in zebra finch discerns the neural substrate involved in segregation of conspecific song from background noise”, Journal of Neurophysiology, vol. 99, pp. 931-938, 2008.PDF icon Download full paper (832.59 KB)
I. Blockx, Verhoye, M., Van Audekerke, J., Bergwerf, I., Kane, J. X., Delgado Y Palacios, R., Veraart, J., Jeurissen, B., Raber, K., Von Hörsten, S., Ponsaerts, P., Sijbers, J., Leergaard, T. B., and Van Der Linden, A., “Identification and characterization of Huntington related pathology: an in vivo DKI imaging study”, NeuroImage, vol. 63, no. 2, pp. 653-662, 2012.
M. Verhoye, Van Der Linden, A., Van Audekerke, J., Sijbers, J., Eens, M., and Balthazart, J., “Imaging birds in a bird cage: in-vivo FSE 3D MRI of bird brain”, MAGMA: Magnetic Resonance Materials in Physics, Biology and Medicine, vol. 6, pp. 22-27, 1998.PDF icon Download paper (1.33 MB)
R. Delgado Y Palacios, Adriaan, C., Kim, H., Verhoye, M., Poot, D. H. J., Jouke, D., Van Audekerke, J., Benveniste, H., Sijbers, J., Wiborg, O., and Van Der Linden, A., “Magnetic resonance imaging and spectroscopy reveal differential hippocampal changes in anhedonic and resilient subtypes of the chronic mild stress rat model”, Biological psychiatry, vol. 70, pp. 449-457, 2011.
J. Rajan, Jeurissen, B., Verhoye, M., Van Audekerke, J., and Sijbers, J., “Maximum likelihood estimation based denoising of magnetic resonance images using restricted local neighborhoods”, Physics in Medicine and Biology, vol. 56, pp. 5221-5234, 2011.PDF icon Download full paper (643.93 KB)
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., “Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.”, NeuroImage, vol. 59, pp. 957-67, 2012.
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images.”, Magnetic resonance imaging, vol. 30, no. 10, pp. 1512-8, 2012.
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images”, Magnetic Resonance Imaging, vol. 30, no. 10, pp. 1512-1518, 2012.PDF icon Download full paper (1.11 MB)
J. Sijbers, Van Audekerke, J., Verhoye, M., Van Der Linden, A., and Van Dyck, D., “Reduction of ECG and gradient related artifacts in simultaneously recorded human EEG/MRI data”, Magnetic Resonance Imaging, vol. 18, pp. 881-886, 2000.PDF icon Download paper (2 MB)
J. Sijbers, Michiels, I., Verhoye, M., Van Audekerke, J., Van Der Linden, A., and Van Dyck, D., “Restoration of MR induced artifacts in simultaneously recorded MR/EEG data”, Magnetic Resonance Imaging, vol. 17, pp. 1383-1393, 1999.PDF icon Download paper (1.09 MB)
V. Van Meir, Boumans, T., De Groof, G., Van Audekerke, J., Smolders, A., Scheunders, P., Sijbers, J., Verhoye, M., Balthazart, J., and Van Der Linden, A., “Spatiotemporal properties of the BOLD response in the songbirds auditory circuit during a variety of listening tasks”, NeuroImage, vol. 25, pp. 1242-1255, 2005.
J. Van Audekerke, Verhoye, M., Peeters, R. R., Sijbers, J., and Van Der Linden, A., “Special designed RF-antenna with integrated non-invasive carbon electrodes for simultaneous MRI and EEG acquisition at 7T”, Magnetic Resonance Imaging, vol. 18, pp. 887-891, 2000.PDF icon Download full paper (179 KB)
S. Sekar, Jonckers, E., Verhoye, M., Willems, R., Veraart, J., Van Audekerke, J., Couto, J., Giugliano, M., Wuyts, K., Dedeurwaerdere, S., Sijbers, J., Mackie, C., Ver Donck, L., Steckler, T., and Van Der Linden, A., “Subchronic memantine induced concurrent functional disconnectivity and altered ultra-structural tissue integrity in the rodent brain: revealed by multimodal MRI.”, Psychopharmacology, vol. 227, no. 3, pp. 479-91, 2013.
S. D. Washington, Hamaide, J., Jeurissen, B., Van Steenkiste, G., Huysmans, T., Sijbers, J., Deleye, S., Kanwal, J. S., De Groof, G., Liang, S., Van Audekerke, J., Wenstrup, J. J., Van Der Linden, A., Radtke-Schuller, S., and Verhoye, M., “A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii)”, NeuroImage, vol. 183, pp. 300-313, 2018.
G. Ramos-Llordén, den Dekker, A. J., Van Steenkiste, G., Jeurissen, B., Vanhevel, F., Van Audekerke, J., Verhoye, M., and Sijbers, J., “A unified Maximum Likelihood framework for simultaneous motion and T1 estimation in quantitative MR T1 mapping”, IEEE Transactions on Medical Imaging, vol. 36, no. 2, pp. 433 - 446, 2017.

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