Publications

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2024
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “AdAPTS: An Adaptive Atom Probe Tomography Simulation Library”, Microscopy and Microanalysis, vol. 30, no. 1. 2024.
2023
H. Khan, Giraldo, D., Beirinckx, Q., Sijbers, J., Lambin, P., Woodruff, H. C., and Peeters, L. M., “Exploring the Correlation between Disability Status and Brain Volumetric Measurements Using Real-World Retrospective Magnetic Resonance Images in People with Multiple Sclerosis”, Proceedings of the 9th Joint European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) - Americas Committee for Treatment and Research in Multiple Sclerosis (ACTRIMS) Meeting. October 11-13, Milan, Italy, 2023.
2021
S. Hosseinnejad, Bosch, E. G. T., Kohr, H., Lazić, I., Zharinov, V., Franken, E., Sijbers, J., and De Beenhouwer, J., “3D atomic resolution tomography from iDPC-STEM images using multiple atom model prior”, Microscopy Conference. 2021.PDF icon Download abstract (534.35 KB)
2020
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., Friedrich, T., Lobato, I., O'Leary, C. M., Varambhia, A., Altantzis, T., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “3D Atomic Scale Quantification of Nanostructures and their Dynamics Using Model-based STEM”, Microscopy & Microanalysis 2020 (online), Milwaukee, United States. 2020.
S. Jillings, Van Ombergen, A., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., Kozlovskaya, I., Sunaert, S., Parizel, P. M., Sinitsyn, V., Petrovichev, V., Laureys, S., P Eulenburg, zu, Sijbers, J., Wuyts, F. L., and Jeurissen, B., “Diffusion MRI reveals macro- and microstructural changes in cosmonauts' brains after long-duration spaceflight”, Proc Intl Soc Mag Reson Med 28. p. 4531, 2020.
S. Jillings, Van Ombergen, A., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., Kozlovskaya, I., Sunaert, S., Parizel, P. M., Sinitsyn, V., Petrovichev, V., Laureys, S., P Eulenburg, zu, Sijbers, J., Wuyts, F. L., and Jeurissen, B., “Diffusion MRI reveals macro- and microstructural changes in cosmonauts' brains after long-duration spaceflight”, Proc Intl Soc Mag Reson Med 28. p. 4531, 2020.
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., E Irmak, A., Friedrich, T., Lobato, I., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “Strategies for quantifying the 3D atomic structure and the dynamics of nanomaterials using model-based STEM”, Virtual MRS Spring/ Fall Meeting, Boston, United States (online). 2020.
2019
S. Jillings, Van Ombergen, A., Tomilovskaya, E., Laureys, S., P Eulenburg, zu, Sunaert, S., Sijbers, J., Wuyts, F. L., and Jeurissen, B., “Diffusion-weighted imaging reveals structural brain changes in cosmonauts after long-duration spaceflight”, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology, Rotterdam, The Netherlands, vol. 32 (Suppl. 1). p. Magn Reson Mater Phy. 2019; 32(Suppl. 1):S101, 2019.
F. L. Wuyts, Jillings, S., Van Ombergen, A., Jeurissen, B., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., and others, “Novel insight on effect and recovery of long-duration spaceflight on the ventricles of the space traveller's brain”, Proceedings of the International Astronautical Congress, IAC, vol. 2019. International Astronautical Federation, p. IAC–19_A1_2_4_x51230, 2019.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., “Quantifying 3D atomic structures of nanomaterials and their dynamics using model-based scanning transmission electron microscopy”, Spring Meeting of the EMRS, Nice, France. 2019.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., “Strategies for quantifying 3D atomic structures of nanomaterials and their dynamics using dose-efficient ADF STEM”, PICO2019, Vaalsbroek, The Netherlands. 2019.
Y. - T. Ling, Cools, S., De Beenhouwer, J., Sijbers, J., and Vandervorst, W., “A Trajectory Based Bottom-Up Volume Reconstruction Method for Atom Probe Tomography”, European Atom Probe Workshop. 2019.
2018
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “Bayesian analysis of noisy scanning transmission electron microscopy images for single atom detection”, SCANDEM 2018, Technical University of Denmark, Kgs. Lyngby, Denmark. p. 95, 2018.
A. Van Ombergen, Wuyts, F. L., Jeurissen, B., Sijbers, J., Vanhevel, F., Jillings, S., Parizel, P. M., Sunaert, S., Van de Heyning, P. H., Dousset, V., Laureys, S. S. L., and Demertzi, A., “Changes in intrinsic functional brain connectivity after first-time exposure to parabolic flight”, 39th ISGP Meeting & ESA Life Sciences Meeting. 2018.
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., “Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials”, IMC19, Sydney, Australia. 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “The maximum a posteriori probability rule to detect single atoms from low signal-to-noise ratio scanning transmission electron microscopy images”, IMC19, Sydney, Australia. 2018.
2016
B. Goris, De Beenhouwer, J., De Backer, A., Zanaga, D., Batenburg, K. J., Sánchez-Iglesias, A., Liz-Marzán, L. M., Van Aert, S., Sijbers, J., Van Tendeloo, G., and Bals, S., “Investigating lattice strain in Au nanodecahedrons”, European Microscopy Congress 2016. 2016.
J. Kenney, McInerney, S., McPhilemy, G., Najt, P., Scanlon, C., Arndt, S., Scherz, E., Byrne, F., Leemans, A., Jeurissen, B., Donohoe, G., Hallahan, B., McDonald, C., and Cannon, D., “Lateralisation of the arcuate fasciculus in psychosis & the role in verbal learning & auditory verbal hallucinations”, vol. 26. Elsevier Science Bv, Po Box 211, 1000 Ae Amsterdam, Netherlands, pp. S76–S77, 2016.
T. Roine, Jeurissen, B., Perrone, D., Aelterman, J., Philips, W., Sijbers, J., and Leemans, A., “Methodological Considerations on Graph Theoretical Analysis of Structural Brain Networks”, Proc. Intl. Soc. Mag. Reson. Med. 24. p. 3437, 2016.
2015
G. Van Eyndhoven, Batenburg, K. J., Kazantsev, D., Van Nieuwenhove, V., Lee, P. D., Dobson, K. J., and Sijbers, J., “A 4D CT reconstruction algorithm for fast liquid flow imaging”, Applied Inverse Problems Conference, Helsinki. 2015.
A. Van Ombergen, Jeurissen, B., Vanhevel, F., Loeckx, D., Dousset, V., Parizel, P. M., and Wuyts, F. L., “A first insight in regional brain changes after parabolic flight: a voxel-based morphometry study”, Proc. Intl. Soc. Mag. Reson. Med. 23. p. 1258, 2015.
2014
D. Lacko, Huysmans, T., Claeskens, A., Verwulgen, S., Aerts, P., Sijbers, J., and De Bruyne, G., “An Anthropometric Shape Model for the Design of Sports Helmets”, European Conference on Protective Clothing (ECPC). 2014.
T. Roine, Jeurissen, B., Philips, W., Leemans, A., and Sijbers, J., “Improving fiber orientation estimation in constrained spherical deconvolution under non-white matter partial volume effects”, Proceedings of the Joint Annual Meeting ISMRM–ESMRMB. p. 4492, 2014.PDF icon 4492.pdf (574.06 KB)
T. Roine, Jeurissen, B., Philips, W., Leemans, A., and Sijbers, J., “Isotropic non-white matter partial volume effects in constrained spherical deconvolution”, Sixth Annual Meeting of the Benelux ISMRM Chapter. 2014.
N. J. Forde, Scanlon, C., Emsell, L., O'Donoghue, S., Chaddock, C., Leemans, A., Jeurissen, B., Cannon, D. M., Murray, R. M., and McDonald, C., “Structural brain network analysis in families multiply affected with bipolar 1 disorder”, International Review of Psychosis & Bipolarity. Athens, Greece, 2014.

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