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2023
E. Ribeiro Sabidussi, Klein, S., Jeurissen, B., and Poot, D. H. J., “dtiRIM: A generalisable deep learning method for diffusion tensor imaging”, Neuroimage, vol. 269, 2023.PDF icon Download paper (5.11 MB)
B. Huyge, Sanctorum, J., Jeurissen, B., De Beenhouwer, J., and Sijbers, J., “Fiber Orientation Estimation from X-ray Dark Field Images of Fiber Reinforced Polymers using Constrained Spherical Deconvolution”, Polymers, vol. 15, no. 13, p. 2887, 2023.PDF icon Download paper (2.95 MB)
J. Renders, Jeurissen, B., Nguyen, A. - T., De Beenhouwer, J., and Sijbers, J., “ImWIP: open-source image warping toolbox with adjoints and derivatives”, SoftwareX, vol. 24, p. 101524, 2023.PDF icon Download paper (1 MB)
J. - D. Tournier, Jeurissen, B., and Christiaens, D., “Iterative model-based Rician bias correction and its application to denoising in diffusion MRI”, Proc Intl Soc Mag Reson Med. p. 3795, 2023.
J. Morez, Szczepankiewicz, F., den Dekker, A. J., Vanhevel, F., Sijbers, J., and Jeurissen, B., “Optimal experimental design and estimation for q-space trajectory imaging”, Human Brain Mapping, vol. 44, no. 4, pp. 1793-1809, 2023.PDF icon Download paper (5.87 MB)
S. Jillings, Pechenkova, E. V., Tomilovskaya, E., Rukavishnikov, I., Jeurissen, B., Van Ombergen, A., Nosikova, I., Rumshiskaya, A., Litvinova, L., Annen, J., De Laet, C., Schoenmaekers, C., Sijbers, J., Petrovichev, V., Sunaert, S., Parizel, P. M., Sinitsyn, V., P Eulenburg, zu, Laureys, S. S. L., Demertzi, A., and Wuyts, F. L., “Prolonged microgravity induces reversible and persistent changes on human cerebral connectivity”, Communications Biology, vol. 6, no. 46, 2023.
D. Giraldo, Beirinckx, Q., den Dekker, A. J., Jeurissen, B., and Sijbers, J., “Super-resolution reconstruction of multi-slice T2-w FLAIR MRI improves Multiple Sclerosis lesion segmentation”, in 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Sydney, Australia, 2023.
2024
N. Vidas-Guscic, van Rijswijk, J., Van Audekerke, J., Jeurissen, B., Nnah, I., Tang, H., Muñoz-Sanjuan, I., Pustina, D., Cachope, R., Van der Linden, A., Bertoglio, D., and Verhoye, M., “Diffusion MRI marks progressive alterations in fiber integrity in the zQ175DN mouse model of Huntington's disease”, Neurobiology of Disease, vol. 193, p. 106438, 2024.
B. Jeurissen, Jillings, S., Giraldo, D. L., Van Ombergen, A., Tomilovskaya, E., Pechenkova, E., Rukavishnikov, I., Petrovichev, V., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Fixel-based analysis of multi-shell diffusion MRI reveals white matter changes after long-duration spaceflight”, Proc. Intl. Soc. Mag. Reson. Med. p. 2057, 2024.
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
2025
I. O. Jelescu, Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Schilling, K. G., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507 - 2534, 2025.
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.
C. Smekens, Beirinckx, Q., Bosmans, F., Vanhevel, F., Snoeckx, A., Sijbers, J., Jeurissen, B., Janssens, T., and Van Dyck, P., “Deep Learning-Enhanced Accelerated 2D TSE and 3D Super-Resolution Dixon TSE for Rapid Comprehensive Knee Joint Assessment”, Investigative Radiology, vol. 60, no. 3, pp. 220-233, 2025.
J. Morez, De Luca, A., Pietsch, M., Christiaens, D., Baete, S. H., Reisert, M., and Jeurissen, B., Handbook of Diffusion MR Tractography: Multishell models. Elsevier, 2025, pp. 201 - 220.
G. Tang, Ahmadi, S. - A., Jillings, S., Jeurissen, B., Tomilovskaya, E., Nosikova, I., Ryabova, A., Pechenkova, E., Petrovichev, V., Rukavishnikov, I., Velten, T., Gripshi, M., Van Ombergen, A., Wuyts, F. L., and Eulenburg, Pzu, “MReye-Seg: development and validation of an automated MRI pipeline for standardised ocular and orbital morphometrics”, Eye, vol. 39, no. 18, pp. 3294 - 3305, 2025.
2026
J. Morez, “Accurate and precise parameter estimation for diffusion magnetic resonance imaging”, 2026.
G. Tang, Patil, K. R., Hoffstaedter, F., More, S., Eickhoff, S. B., Jillings, S., Jeurissen, B., Tomilovskaya, E., Gerlach, D., Nosikova, I., Riabova, A., Pechenkova, E., Petrovichev, V., Rukavishnikov, I., Makovskaya, L., Van Ombergen, A., Wuyts, F. L., and Eulenburg, Pzu, “Longitudinal brain-age predictions comprising long-duration spaceflight missions”, npj Microgravity, vol. 12, no. 1, 2026.
G. Tang, Jillings, S., Jeurissen, B., Tomilovskaya, E., Nosikova, I., Riabova, A., Pechenkova, E. V., Petrovichev, V., Rukavishnikov, I., Sunaert, S., Parizel, P. M., Makovskaya, L., Sinitsyn, V., Sijbers, J., Annen, J., Laureys, S. S. L., Van Ombergen, A., Ahmadi, S. - A., Wuyts, F. L., and Eulenburg, Pzu, “Physiological cerebrospinal fluid interactions between brain and eye structures are altered after long-duration spaceflight”, Experimental Physiology, 2026.

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