Publications

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Thesis
T. Elberfeld, “Parametric Fiber Analysis for Glass Fiber-reinforced Composite Tomographic Images”, 2023.PDF icon Download PhD thesis (35.09 MB)
Journal Article
B. Fröhler, Elberfeld, T., Möller, T., Weissenböck, J., De Beenhouwer, J., Sijbers, J., Hege, H. - C., Kastner, J., and Heinzl, C., “A Visual Tool for the Analysis of Algorithms for Tomographic Fiber Reconstruction in Materials Science”, Computer Graphics Forum, vol. 38, no. 3, pp. 273-283, 2019.
M. Bührer, Xu, H., Eller, J., Sijbers, J., Stampanoni, M., and Marone, F., “Unveiling Water Dynamics in Fuel Cells from Time-Resolved Tomographic Microscopy Data”, Scientific Reports, vol. 10, no. 16388 , 2020.PDF icon Download paper (4.12 MB)
N. J. Forde, O'Donoghue, S., Scanlon, C., Emsell, L., Chaddock, C., Leemans, A., Jeurissen, B., Barker, G. J., Cannon, D. M., Murray, R. M., and others, “Structural brain network analysis in families multiply affected with bipolar I disorder”, Psychiatry Research: Neuroimaging, vol. 234, pp. 44–51, 2015.
S. Jillings, Pechenkova, E. V., Tomilovskaya, E., Rukavishnikov, I., Jeurissen, B., Van Ombergen, A., Nosikova, I., Rumshiskaya, A., Litvinova, L., Annen, J., De Laet, C., Schoenmaekers, C., Sijbers, J., Petrovichev, V., Sunaert, S., Parizel, P. M., Sinitsyn, V., P Eulenburg, zu, Laureys, S. S. L., Demertzi, A., and Wuyts, F. L., “Prolonged microgravity induces reversible and persistent changes on human cerebral connectivity”, Communications Biology, vol. 6, no. 46, 2023.
G. Tang, Jillings, S., Jeurissen, B., Tomilovskaya, E., Nosikova, I., Riabova, A., Pechenkova, E. V., Petrovichev, V., Rukavishnikov, I., Sunaert, S., Parizel, P. M., Makovskaya, L., Sinitsyn, V., Sijbers, J., Annen, J., Laureys, S. S. L., Van Ombergen, A., Ahmadi, S. - A., Wuyts, F. L., and Eulenburg, Pzu, “Physiological cerebrospinal fluid interactions between brain and eye structures are altered after long-duration spaceflight”, Experimental Physiology, 2026.
T. Elberfeld, De Beenhouwer, J., den Dekker, A. J., Heinzl, C., and Sijbers, J., “Parametric Reconstruction of Glass Fiber-reinforced Polymer Composites from X-ray Projection Data - A Simulation Study”, Journal of Nondestructive Evaluation, vol. 37, no. 62, pp. 1573-4862, 2018.
G. Ramos-Llordén, Vegas-Sánchez-Ferrero, G., Björk, M., Vanhevel, F., Parizel, P. M., Estépar, R. San José, den Dekker, A. J., and Sijbers, J., “NOVIFAST: A fast algorithm for accurate and precise VFA MRI T1 mapping”, IEEE Transactions on Medical Imaging, vol. 37, no. 11, pp. 2414 - 2427, 2018.PDF icon Download paper (3.3 MB)
G. Tang, Ahmadi, S. - A., Jillings, S., Jeurissen, B., Tomilovskaya, E., Nosikova, I., Ryabova, A., Pechenkova, E., Petrovichev, V., Rukavishnikov, I., Velten, T., Gripshi, M., Van Ombergen, A., Wuyts, F. L., and Eulenburg, Pzu, “MReye-Seg: development and validation of an automated MRI pipeline for standardised ocular and orbital morphometrics”, Eye, vol. 39, no. 18, pp. 3294 - 3305, 2025.
S. Jillings, Van Ombergen, A., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E., Rukavishnikov, I., Kozlovskaya, I. B., Manko, O., Danilichev, S., Sunaert, S., Parizel, P. M., Sinitsyn, V., Petrovichev, V., Laureys, S., Eulenburg, Pzu, Sijbers, J., Wuyts, F. L., and Jeurissen, B., “Macro- and microstructural changes in cosmonauts’ brains after long-duration spaceflight”, Science Advances, vol. 6, no. 36, p. eaaz9488, 2020.PDF icon Download paper (942.53 KB)
G. Tang, Patil, K. R., Hoffstaedter, F., More, S., Eickhoff, S. B., Jillings, S., Jeurissen, B., Tomilovskaya, E., Gerlach, D., Nosikova, I., Riabova, A., Pechenkova, E., Petrovichev, V., Rukavishnikov, I., Makovskaya, L., Van Ombergen, A., Wuyts, F. L., and Eulenburg, Pzu, “Longitudinal brain-age predictions comprising long-duration spaceflight missions”, npj Microgravity, vol. 12, no. 1, 2026.
G. Tang, Patil, K. R., Hoffstaedter, F., More, S., Eickhoff, S. B., Jillings, S., Jeurissen, B., Tomilovskaya, E., Gerlach, D., Nosikova, I., Riabova, A., Pechenkova, E., Petrovichev, V., Rukavishnikov, I., Makovskaya, L., Van Ombergen, A., Wuyts, F. L., and Eulenburg, Pzu, “Longitudinal brain-age predictions comprising long-duration spaceflight missions”, npj Microgravity, vol. 12, no. 1, 2026.
L. Emsell, Leemans, A., Langan, C., Van Hecke, W., Barker, G. J., McCarthy, P., Jeurissen, B., Sijbers, J., Sunaert, S., Cannon, D. M., and McDonald, C., “Limbic and callosal white matter changes in euthymic bipolar I disorder: an advanced diffusion MRI tractography study”, Biologicial Psychiatry, vol. 73, no. 2, pp. 194-201, 2013.
D. Giraldo, Smith, R. E., Struyfs, H., Niemantsverdriet, E., De Roeck, E., Bjerke, M., Engelborghs, S., Romero, E., Sijbers, J., and Jeurissen, B., “Investigating tissue-specific abnormalities in Alzheimer’s disease with multi-shell diffusion MRI”, Journal of Alzheimer's Disease, vol. 90, no. 4, pp. 1771-1791, 2022.
M. Verhoye, Van Der Linden, A., Van Audekerke, J., Sijbers, J., Eens, M., and Balthazart, J., “Imaging birds in a bird cage: in-vivo FSE 3D MRI of bird brain”, MAGMA: Magnetic Resonance Materials in Physics, Biology and Medicine, vol. 6, pp. 22-27, 1998.PDF icon Download paper (1.33 MB)
A. De Luca, Ianus, A., Leemans, A., Palombo, M., Shemesh, N., Zhang, H., Alexander, D. C., Nilsson, M., Froeling, M., Biessels, G. - J., Zucchelli, M., Frigo, M., Albay, E., Sedlar, S., Alimi, A., Deslauriers-Gauthier, S., Deriche, R., Fick, R., Afzali, M., Pieciak, T., Bogusz, F., Aja-Fernandez, S., Ozarslan, E., Jones, D. K., Chen, H., Jin, M., Zhang, Z., Wang, F., Nath, V., Parvathaneni, P., Morez, J., Sijbers, J., Jeurissen, B., Shreyas,, Fadnavis,, Endres, S., Rokem, A., Garyfallidis, E., Sanchez, I., Prchkovska, V., Rodrigues, P., Landman, B. A., and Schilling, K. G., “On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: chronicles of the MEMENTO challenge”, NeuroImage, vol. 240, no. 118367, 2021.
B. De Samber, Renders, J., Elberfeld, T., Maris, Y., Sanctorum, J., Six, N., Liang, Z., De Beenhouwer, J., and Sijbers, J., “FleXCT: a Flexible X-ray CT scanner with 10 degrees of freedom”, Optics Express, vol. 29, no. 3, pp. 3438-3457, 2021.PDF icon Download paper (14.25 MB)
A. J. Rebelo, Scheunders, P., Esler, K. J., and Meire, P., “Evaluating palmiet wetland decline: a comparison of three methods”, Remote Sensing Applications: Society and Environment, vol. 8, pp. 212-223, 2017.
G. Barisano, Sepehrband, F., Collins, H. R., Jillings, S., Jeurissen, B., Taylor, A. J., Schoenmaekers, C., De Laet, C., Rukavishnikov, I., Nosikova, I., Rumshiskaya, A., Annen, J., Sijbers, J., Laureys, S. S. L., Van Ombergen, A., Petrovichev, V., Sinitsyn, V., Pechenkova, E. V., Grishin, A., Eulenburg, Pzu, Law, M., Sunaert, S., Parizel, P. M., Tomilovskaya, E., Roberts, D., and Wuyts, F. L., “The effect of prolonged Spaceflight on Cerebrospinal Fluid and Perivascular Spaces of Astronauts and Cosmonauts”, PNAS, vol. 119, no. 17, 2022.
W. Van Hecke, Nagels, G., Emonds, G., Leemans, A., Sijbers, J., van Goethem, J., and Parizel, P. M., “A diffusion tensor imaging group study of the spinal cord in multiple sclerosis patients with and without T2 spinal cord lesions.”, Journal of magnetic resonance imaging : JMRI, vol. 30, no. 1, pp. 25-34, 2009.PDF icon Download paper (902.67 KB)
H. Struyfs, Van Hecke, W., Veraart, J., Sijbers, J., Slaets, S., De Belder, M., Wuyts, L., Peters, B., Sleegers, K., Robberecht, C., Van Broeckhoven, C., De Belder, F., Parizel, P. M., and Engelborghs, S., “Diffusion Kurtosis Imaging: a possible MRI biomarker for AD diagnosis?”, Journal of Alzheimer’s Disease, vol. 48, pp. 937-948, 2015.PDF icon Download paper (374.95 KB)
T. Elberfeld, Fröhler, B., Heinzl, C., Sijbers, J., and De Beenhouwer, J., “cuPARE: Parametric Reconstruction of Curved Fibres from Glass fibre-reinforced Composites”, Nondestructive Testing and Evaluation, 2022.PDF icon Download paper (9.66 MB)
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
I. O. Jelescu, Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Schilling, K. G., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507 - 2534, 2025.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.

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