Tomography

Tomography is an imaging technique that combines projections taken from different directions into a reconstruction of the interior of a patient or an object. The ASTRA research group (“All Scales Tomographic Reconstruction Antwerp”) of imec-Vision Lab develops tomographic reconstruction algorithms for electron, X-ray, neutron, and magnetic resonance imaging. The ASTRA group developed the ASTRA-Toolbox, which is an open source, GPU accelerated software platform for the development of novel tomographic reconstruction methods; it can be downloaded from www.astra-toolbox.com.

Key expertises:

  • Phase contrast X-ray CT (edge illumination and grating based interferometry)
  • X-ray tomography for non-standard acquisition geometries (e.g. laminography, tomosynthesis, ...)
  • Dynamic (4D) tomography
  • Discrete tomography
  • Electron tomography

Journal publications

2012

T. Roelandts, Batenburg, K. J., Biermans, E., Kubel, C., Bals, S., and Sijbers, J., “Accurate segmentation of dense nanoparticles by partially discrete electron tomography”, Ultramicroscopy, vol. 114, pp. 96-105, 2012.PDF icon Download paper (1.71 MB)

2011

W. J. Palenstijn, Batenburg, K. J., and Sijbers, J., “Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)”, Journal of structural biology, vol. 176, no. 2, pp. 250-253, 2011.PDF icon Download paper (527.21 KB)
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Optimal threshold selection for segmentation of dense homogeneous objects in tomographic reconstructions”, IEEE Transactions on Medical Imaging, vol. 30, pp. 980-989, 2011.PDF icon Download paper (1.59 MB)
R. Pinho, Tournoy, K. G., and Sijbers, J., “Assessment and Stenting of Tracheal Stenosis using Deformable Shape Models”, Medical Image Analysis, vol. 15, pp. 250-266, 2011.
K. J. Batenburg, Van Aarle, W., and Sijbers, J., “A Semi-Automatic Algorithm for Grey Level Estimation in Tomography”, Pattern Recognition Letters, vol. 32, pp. 1395-1405, 2011.
K. J. Batenburg and Sijbers, J., “DART: A practical reconstruction algorithm for discrete tomography”, IEEE Transactions on Image Processing, vol. 20, pp. 2542-2553, 2011.PDF icon Download paper (2.12 MB)
G. Van Gompel, Van Slambrouck, K., Defrise, M., Batenburg, K. J., De Mey, J., Sijbers, J., and Nuyts, J., “Iterative correction of beam hardening artifacts in CT”, Medical Physics, vol. 38, pp. 36-49, 2011.

2010

R. Pinho, “A Decision Support System for the Assessment and Stenting of Tracheal Stenosis”, University of Antwerp, Antwerp, 2010.PDF icon Download thesis (3.48 MB)
K. J. Batenburg, Sijbers, J., Poulsen, H. F., and Knudsen, E., “DART: A Robust Algorithm for Fast Reconstruction of 3D Grain Maps”, Journal of Applied Crystallography, vol. 43, pp. 1464-1473, 2010.PDF icon Download paper (824.99 KB)

2009

H. E. Bortier, Bernat, A., Huysmans, T., Van Glabbeek, F., Sijbers, J., Pinho, R., Gielen, J., and Hubens, G., “Osteologic exploration of the clavicle: a new approach”, The FASEB Journal, vol. 23, 2009.

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