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2025
I. O. Jelescu, Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Schilling, K. G., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507 - 2534, 2025.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
N. Francken, Sanctorum, J., Huyge, B., Sijbers, J., and De Beenhouwer, J., “Correcting for focal spot drift in edge illumination X-ray phase contrast imaging”, in 14th Conference on Industrial Computed Tomography (iCT), 4 - 7 February 2025, Antwerp, Belgium, 2025.
J. Merckx, den Dekker, A. J., Sijbers, J., and De Beenhouwer, J., “DAMMER: Direct Adaptive Multi-resolution MEsh Reconstruction from X-ray measurements”, IEEE Transactions on Computational Imaging , vol. 11, pp. 926 - 941, 2025.
J. Merckx, den Dekker, A. J., Sijbers, J., and De Beenhouwer, J., “DAMMER: Direct Adaptive Multi-resolution MEsh Reconstruction from X-ray measurements”, IEEE Transactions on Computational Imaging , vol. 11, pp. 926 - 941, 2025.
M. Yosifov, Lang, T., Florian, V., Gerth, S., De Beenhouwer, J., Sijbers, J., Kastner, J., and Heinzl, C., “Degradation Detection in Rice Products via Shape Variations in XCT Simulation-Empowered AI”, Journal of Nondestructive Evaluation, vol. 44, no. 10, 2025.
N. Francken, “Edge illumination X-ray phase contrast imaging: Advancements in simulations and inline acquisitions”, 2025.
B. Huyge, Francken, N., Sanctorum, J., Sanctorum, J., De Beenhouwer, J., and Sijbers, J., “Edge illumination X-ray phase contrast imaging with continuous mask motion”, Optics Express, vol. 33, no. 19, pp. 41271-41286, 2025.PDF icon Download paper (4.78 MB)
N. Francken, Sanctorum, J., Huyge, B., Sijbers, J., and De Beenhouwer, J., “Efficient X-ray dark field contrast simulations using a condensed history approach”, Optics Express, vol. 33, no. 2, pp. 3562-3576, 2025.
J. Lüken, Fleischmann, C., Sijbers, J., and De Beenhouwer, J., “Enhancing AdAPTS: Fast Field Evaporation Simulation with Parametric Local Electrodes for Atom Probe Tomography”, APT&M. 2025.
P. Paramonov, Sanctorum, J. G., Danckaers, F., De Beenhouwer, J., and Sijbers, J., “Exact reconstruction for helical cone-beam X-ray CT using the ASTRA toolbox”, in 10th International Symposium on Digital Industrial Radiology and Computed Tomography, 1 – 3 July 2025 in Paris, France (DIR 2025), 2025, vol. 30(8).PDF icon dir2025-shortpaper-p_paramonov-we3a3.pdf (290.68 KB)
P. Paramonov, Sanctorum, J. G., Danckaers, F., De Beenhouwer, J., and Sijbers, J., “Exact reconstruction for helical cone-beam X-ray CT using the ASTRA toolbox”, in 10th International Symposium on Digital Industrial Radiology and Computed Tomography, 1 – 3 July 2025 in Paris, France (DIR 2025), 2025, vol. 30(8).PDF icon dir2025-shortpaper-p_paramonov-we3a3.pdf (290.68 KB)
P. - J. Vanthienen, Francken, N., Sanctorum, J., Sijbers, J., and De Beenhouwer, J., “Gratings for multiresolution edge illumination X-ray phase contrast imaging: concept and simulation”, Optics Express, vol. 33, no. 8, pp. 17886-17902, 2025.
J. Morez, De Luca, A., Pietsch, M., Christiaens, D., Baete, S. H., Reisert, M., and Jeurissen, B., Handbook of Diffusion MR Tractography: Multishell models. Elsevier, 2025, pp. 201 - 220.
M. Siqueira Pinto, Anania, V., Paolella, R., Smekens, C., Billiet, T., Janssens, T., den Dekker, A. J., Sijbers, J., Guns, P. - J., and Van Dyck, P., “Harmonization of diffusion MRI on healthy subjects using NeuroCombat and LongCombat: a B-Q MINDED Brain Intra-and Inter-Scanner Study”, Frontiers in Neuroscience, vol. 19, 2025.
J. Deng, Meenaketan, B. Linkoon P., Takalloo, S. Ebrahimi, Chai, Y. Chin, Torfs, T., Braeken, D., De Beenhouwer, J., and Sijbers, J., “In-depth imaging of in-vitro tissue models using electrical impedance tomography”, in iCT 2025 - 14th Conference on Industrial Computed Tomography, 2025, vol. 4 - 7 February.
J. Deng, Meenaketan, B. Linkoon P., Takalloo, S. Ebrahimi, Chai, Y. Chin, Torfs, T., Braeken, D., De Beenhouwer, J., and Sijbers, J., “In-depth imaging of in-vitro tissue models using electrical impedance tomography”, in iCT 2025 - 14th Conference on Industrial Computed Tomography, 2025, vol. 4 - 7 February.
H. Khan, Giraldo, D., Woodruff, H. C., Werthen-Brabants, L., Mali, S. Atul, Amirrajab, S., De Brouwer, E., Popescu, V., Van Wijmeersch, B., Gerlach, O., Sijbers, J., Peeters, L. M., and Lambin, P., “Leveraging Hand-Crafted Radiomics on Multicenter FLAIR MRI for Predicting Disability Worsening in People with Multiple Sclerosis”, Front. Neurosci., vol. 19, 2025.
Y. Huybrechts, De Ridder, R., Bergen, D., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Vergauwen, L., Schepers, D., Van Dijck, E., Tong, Q., Verhulst, A., De Beenhouwer, J., Sijbers, J., Hammond, C., Forlino, A., Mortier, G., Coucke, P., P Witten, E., Kwon, R. Young, Willaert, A., Hendrickx, G., and Van Hul, W., “Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget’s Disease of Bone”, Calcified Tissue International, vol. 116, no. 1, pp. 1-15, 2025.
Y. Huybrechts, De Ridder, R., Bergen, D., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Vergauwen, L., Schepers, D., Van Dijck, E., Tong, Q., Verhulst, A., De Beenhouwer, J., Sijbers, J., Hammond, C., Forlino, A., Mortier, G., Coucke, P., P Witten, E., Kwon, R. Young, Willaert, A., Hendrickx, G., and Van Hul, W., “Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget’s Disease of Bone”, Calcified Tissue International, vol. 116, no. 1, pp. 1-15, 2025.
Y. Huybrechts, De Ridder, R., Bergen, D., De Samber, B., Boudin, E., Tonelli, F., Knapen, D., Vergauwen, L., Schepers, D., Van Dijck, E., Tong, Q., Verhulst, A., De Beenhouwer, J., Sijbers, J., Hammond, C., Forlino, A., Mortier, G., Coucke, P., P Witten, E., Kwon, R. Young, Willaert, A., Hendrickx, G., and Van Hul, W., “Loss of the Ubiquitin-Associated Domain of sqstm1/p62 in Zebrafish Causes a Phenotype Resembling Paget’s Disease of Bone”, Calcified Tissue International, vol. 116, no. 1, pp. 1-15, 2025.
D. Ali Chaghdo, Koirala, B., Cristina, L., De Kock, T., Fontaine, L., Hayen, R., and Scheunders, P., “Moisture Content Estimation of Porous Building Stones using Hyperspectral Imaging”, Scientific Data, vol. 13, p. 102, 2025.PDF icon moisture_content_estimation_of_porous_building_sto.pdf (4.32 MB)

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