Publications

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Conference Paper
Kudzinava, M., D. H. J. Poot, A. Plaisier, and J. Sijbers, "Optimized Workflow for Diffusion Kurtosis Imaging of Newborns", ISBI, 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Chicago, USA, pp. 922-926, April, 2011. PDF icon Paper (286.57 KB)PDF icon Presentation (1.25 MB)
Poot, D. H. J., J. Sijbers, and A J. den Dekker, "Optimizing the Diffusion Kurtosis imaging acquisition", European Society for Magnetic Resonance in Medicine and Biology, Valencia, Spain, October, 2008.
Sijbers, J., A J. den Dekker, D. H. J. Poot, R. Bos, M. Verhoye, N. Van Camp, and A. Van Der Linden, "Robust estimation of the noise variance from background MR data", Proceedings of SPIE Medical Imaging: Image Processing, vol. 6144, San Diego, CA, USA, pp. 2018-2028, February, 2006.
Rajan, J., D. H. J. Poot, J. Juntu, and J. Sijbers, "Segmentation Based Noise Variance Estimation from Background MRI Data", ICIAR , vol. 6111, Porto, Portugal, Springer LNCS, pp. 62-70, 2010.
Pintjens, W., D. H. J. Poot, M. Verhoye, A. Van Der Linden, and J. Sijbers, "Susceptibility correction for improved tractography using high field DT-EPI", Proceedings of SPIE Medical Imaging, vol. 6914, San Diego, USA, February, 2008.
Journal Article
Sijbers, J., D. H. J. Poot, A J. den Dekker, and W. Pintjens, "Automatic estimation of the noise variance from the histogram of a magnetic resonance image", Physics in Medicine and Biology, vol. 52, no. 5, pp. 1335-1348, February, 2007. PDF icon Download paper (297.18 KB)
Van Hecke, W., J. Sijbers, S. De Backer, D. H. J. Poot, P. M. Parizel, and A. Leemans, "On the construction of a ground truth framework for evaluating voxel-based diffusion tensor MRI analysis methods", NeuroImage, vol. 46, no. 3, pp. 692-707, July, 2009. PDF icon Download paper (4.14 MB)
Poot, D. H. J., W. Pintjens, M. Verhoye, A. Van Der Linden, and J. Sijbers, "Improved B0 field map estimation for high field EPI", Magnetic Resonance Imaging, vol. 28, no. 3, pp. 441-450, April, 2010. PDF icon Download paper (1.29 MB)
Beirinckx, Q., G. Ramos-Llordén, B. Jeurissen, D. H. J. Poot, P. M. Parizel, M. Verhoye, J. Sijbers, and A J. den Dekker, "Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study", Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.
den Dekker, A J., D. H. J. Poot, R. Bos, and J. Sijbers, "Likelihood based hypothesis tests for brain activation detection from MRI data disturbed by colored noise: a simulation study", IEEE Transactions on Medical Imaging, vol. 28, no. 2, pp. 287-296, February, 2009.
Delgado Y Palacios, R., C. Adriaan, H. Kim, M. Verhoye, D. H. J. Poot, D. Jouke, J. Van Audekerke, H. Benveniste, J. Sijbers, O.. Wiborg, et al., "Magnetic resonance imaging and spectroscopy reveal differential hippocampal changes in anhedonic and resilient subtypes of the chronic mild stress rat model", Biological psychiatry, vol. 70, no. 5, pp. 449-457, 2011.
Blockx, I., G. De Groof, M. Verhoye, J. Van Audekerke, K. Raber, D. H. J. Poot, J. Sijbers, A. P. Osmand, S. Von Hörsten, and A. Van Der Linden, "Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.", NeuroImage, vol. 59, no. 2, pp. 957-67, 2012 Jan 16.
Veraart, J., D. H. J. Poot, W. Van Hecke, I. Blockx, A. Van Der Linden, M. Verhoye, and J. Sijbers, "More accurate estimation of diffusion tensor parameters using diffusion kurtosis imaging", Magnetic Resonance in Medicine, vol. 65, no. 1, pp. 138-145, January, 2011. PDF icon Download paper (387.31 KB)
Rajan, J., D. H. J. Poot, J. Juntu, and J. Sijbers, "Noise measurement from magnitude MRI using local estimates of variance and skewness.", Physics in medicine and biology, vol. 55, issue 16, pp. N441-9, 2010 Aug 21. PDF icon Download paper (219.85 KB)
Poot, D. H. J., A J. den Dekker, E. Achten, M. Verhoye, and J. Sijbers, "Optimal experimental design for Diffusion Kurtosis Imaging", IEEE Transactions on Medical Imaging, vol. 29, no. 3, pp. 819-829, 2010. PDF icon Download paper (1.12 MB)
Poot, D. H. J., B. Jeurissen, Y. Bastiaensen, J. Veraart, W. Van Hecke, P. M. Parizel, and J. Sijbers, "Super-Resolution for Multislice Diffusion Tensor Imaging", Magnetic Resonance in Medicine, vol. 69, issue 1, pp. 103–113, 2013. PDF icon Download paper (1.04 MB)
Van Steenkiste, G., B. Jeurissen, J. Veraart, A J. den Dekker, P. M. Parizel, D. H. J. Poot, and J. Sijbers, "Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations", Magnetic Resonance in Medicine, vol. 75, issue 1, pp. 181-195, 2016.
Van Steenkiste, G., D. H. J. Poot, B. Jeurissen, A J. den Dekker, F. Vanhevel, P. M. Parizel, and J. Sijbers, "Super-resolution T1 estimation: quantitative high resolution T1 mapping from a set of low resolution T1 weighted images with different slice orientations", Magnetic Resonance in Medicine, vol. 77, issue 5, pp. 1818–1830, 2017. PDF icon Download paper (3.3 MB)
Thesis
Poot, D. H. J., "Advances in the reconstruction and statistical processing of Magnetic Resonance images", University of Antwerp, vol. PhD in Sciences: Physics, 2009. PDF icon Download thesis (6.18 MB)
Van Steenkiste, G., "Super-resolution estimation of quantitative MRI parameters", Dept. of Physics, vol. Doctor of Science: University of Antwerp, 2016. PDF icon Download PhD thesis (7.56 MB)

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