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J. Sijbers, “Signal and noise estimation from magnetic resonance images ”, 1998.
J. Sijbers, Van Camp, N., Leemans, A., den Dekker, A. J., Verhoye, M., and Van Der Linden, A., “Coregistration of Micro-MRI, microCT and microPET”, in Workshop on non Invasive 3D Microscopy, University of Antwerp, Belgium, 2004, p. 16.
J. Sijbers, Scheunders, P., Bonnet, N., Van Dyck, D., and Raman, E., “Quantification and improvement of the signal-to-noise ratio in a magnetic resonance image acquisition procedure”, Magnetic Resonance Imaging, vol. 14, pp. 1157-1163, 1996.PDF icon Download paper (1.31 MB)
J. Sijbers, De Beenhouwer, J., Ling, Y. - T., and Vandervorst, W., “A reconstruction method for atom probe tomography”, U.S. Patent 180175752023.
J. Sijbers, Michiels, I., Van Audekerke, J., Verhoye, M., and Van Der Linden, A., “Automatic EEG signal restoration during simultaneous EEG/MR acquisitions”, in SPIE Medical Imaging: Image Processing, San Diego, California, USA, 2000, vol. 3979, pp. 1482-1491.
J. Sijbers, den Dekker, A. J., Verhoye, M., Van Der Linden, A., and Van Dyck, D., “Adaptive anisotropic noise filtering for magnitude MR data”, Magnetic Resonance Imaging, vol. 17, pp. 1533-1539, 1999.PDF icon Download full paper (366 KB)
J. Sijbers, Van Der Linden, A., Scheunders, P., Van Audekerke, J., Raman, E., and Van Dyck, D., “Semi-automatic mouse cerebellum extraction from 3D magnetic resonance data”, in Proceedings of the International Society for Magnetic Resonance in Medicine, New York, USA, 1996, vol. 3, p. 1585.
J. Sijbers and den Dekker, A. J., “Generalized likelihood ratio test for complex fMRI data”, in SPIE Medical Imaging: Physiology, Function, and Structure from Medical Images, San Diego, California, USA, 2004, vol. 5369, pp. 652-663.PDF icon Download full paper (251.15 KB)
M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P. - J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., “Harmonisation of Brain Diffusion MRI: Concepts and Methods”, Frontiers in Neuroscience , vol. 14, pp. 1-17, 2020.PDF icon Download paper (2.61 MB)
M. Siqueira Pinto, Winzeck, S., Correia, M. M., Kornaropoulos, E. N., Menon, D. K., Glocker, B., den Dekker, A. J., Sijbers, J., Guns, P. - J., Van Dyck, P., and Newcombe, V. F. J., “Outcome prediction in Mild Traumatic Brain Injury patients using conventional and diffusion MRI via Support Vector Machine: A CENTER-TBI study”, ISMRM & SMRT Annual Meeting. 2021.
M. Siqueira Pinto, Anania, V., Paolella, R., Smekens, C., Billiet, T., Janssens, T., den Dekker, A. J., Sijbers, J., Guns, P. - J., and Van Dyck, P., “Harmonization of diffusion MRI on healthy subjects using NeuroCombat and LongCombat: a B-Q MINDED Brain Intra-and Inter-Scanner Study”, Frontiers in Neuroscience, vol. 19, 2025.
M. Siqueira Pinto, Winzeck, S., Richter, S., Correia, M. M., Kornaropoulos, E. N., Menon, D. K., Glocker, B., Guns, P. - J., den Dekker, A. J., Sijbers, J., Newcombe, V. F. J., and Van Dyck, P., “Outcome prediction of mild traumatic brain injury using support vector machine based on longitudinal MRdiffusion imaging from CENTER-TBI”, Magn Reson Mater Phy (ESMRMB), vol. 34. p. S54, 2021.
M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P. - J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., “Voxelwise harmonisation of FA on a cohort of 605 healthy subjects using ComBat: an exploratory study”, ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, NL. 2019.
M. Siqueira Pinto, “Improved Diagnosis and Prognosis of Mild Traumatic Brain Injury via Harmonised Diffusion MRI”, 2025.
M. Siqueira Pinto, Winzeck, S., Kornaropoulos, E. N., Richter, S., Paolella, R., Correia, M. M., Glocker, B., Williams, G., Vik, A., Posti, J., Håberg, A. Kristine, Stenberg, J., Guns, P. - J., den Dekker, A. J., Menon, D. K., Sijbers, J., Van Dyck, P., and Newcombe, V. F. J., “Use of support vector machines approach via ComBat harmonized diffusion tensor imaging for the diagnosis and prognosis of mild traumatic brain injury: a CENTER-TBI study”, Journal of Neurotrauma, vol. 40, no. 13-14, pp. 1317-1338, 2023.
N. Six, Renders, J., Sijbers, J., and De Beenhouwer, J., “Gauss-Newton-Krylov for Reconstruction of Polychromatic X-ray CT Images”, IEEE Transactions on Computational Imaging, vol. 7, pp. 1304-1313, 2021.
N. Six, De Beenhouwer, J., Van Nieuwenhove, V., Vanroose, W., and Sijbers, J., “Joint reconstruction and flat-field estimation using support estimation”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.PDF icon Download paper (1.53 MB)
N. Six, Renders, J., De Beenhouwer, J., and Sijbers, J., “Joint reconstruction of attenuation, refraction and dark field X-ray phase contrasts using split Barzilai-Borwein steps”, in SPIE Optical Engineering: Developments in X-Ray Tomography XIV , 2022, vol. 12242, p. 122420O.
N. Six, De Beenhouwer, J., and Sijbers, J., “poly-DART: A discrete algebraic reconstruction technique for polychromatic X-ray CT”, Optics Express, vol. 27, no. 23, pp. 33427-33435, 2019.PDF icon Download paper (997.08 KB)
N. Six, Renders, J., De Beenhouwer, J., and Sijbers, J., “Joint multi-contrast CT for edge illumination X-ray phase contrast imaging using split Barzilai-Borwein steps”, Optics Express, vol. 32, no. 2, pp. 1135-1150, 2024.PDF icon Download paper (13.42 MB)
N. Six, Renders, J., Sijbers, J., and De Beenhouwer, J., “Newton-Krylov Methods For Polychromatic X-Ray CT”, in 2020 IEEE International Conference on Image Processing (ICIP), Abu Dhabi, 2020, pp. 3045-3049.
N. Six, “Improved X-ray CT reconstruction techniques with non-linear imaging models”, 2024.
N. Six, De Beenhouwer, J., and Sijbers, J., “pDART: Discrete algebraic reconstruction using a polychromatic forward model”, in The Fifth International Conference on Image Formation in X-Ray Computed Tomography, Salt Lake City, Utah, USA, 2018.PDF icon Download paper (1.61 MB)
C. Smekens, Vanhevel, F., Jeurissen, B., Van Dyck, P., Sijbers, J., and Janssens, T., “Short T2* quantification of knee structures based on accelerated UTE Spiral VIBE MRI with SPIRiT reconstruction”, Proc Intl Soc Mag Reson Med 28. p. 2687, 2020.
C. Smekens, Beirinckx, Q., Vanhevel, F., Van Dyck, P., den Dekker, A. J., Sijbers, J., Janssens, T., and Jeurissen, B., “Super-resolution T2* mapping of the knee using UTE Spiral VIBE MRI”, Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), 29th Annual Meeting, An Online Experience. p. 3920, 2021.

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