Publications

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2013
K. Zarei Zefreh, Van Aarle, W., Batenburg, K. J., and Sijbers, J., “Super-Resolution of License Plate Images using Algebraic Reconstruction Technique”, Journal of Image and Graphics, vol. 1, no. 2, pp. 94 - 98, 2013.PDF icon Download paper (812.84 KB)
2012
T. Roelandts, Batenburg, K. J., Biermans, E., Kubel, C., Bals, S., and Sijbers, J., “Accurate segmentation of dense nanoparticles by partially discrete electron tomography”, Ultramicroscopy, vol. 114, pp. 96-105, 2012.PDF icon Download paper (1.71 MB)
T. Roelandts, Batenburg, K. J., Biermans, E., Kubel, C., Bals, S., and Sijbers, J., “Accurate segmentation of dense nanoparticles by partially discrete electron tomography”, Ultramicroscopy, vol. 114, pp. 96-105, 2012.PDF icon Download paper (1.71 MB)
T. Roelandts, Batenburg, K. J., Biermans, E., Kubel, C., Bals, S., and Sijbers, J., “Accurate segmentation of dense nanoparticles by partially discrete electron tomography”, Ultramicroscopy, vol. 114, pp. 96-105, 2012.PDF icon Download paper (1.71 MB)
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Automatic parameter estimation for the Discrete Algebraic Reconstruction Technique (DART)”, IEEE Transactions on Image Processing, vol. 21, no. 11, pp. 4608-4621, 2012.PDF icon Download paper (3.91 MB)
N. Van Camp, Blockx, I., Camon, L., de Vera, N., Verhoye, M., Veraart, J., Van Hecke, W., Martinez, E., Guadelupe, S., Sijbers, J., Planas, A., and Van Der Linden, A., “A complementary DTI-histological study in a model of Huntingtons disease”, Neurobiology of Aging, vol. 33, pp. 945-959, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
I. Blockx, Verhoye, M., Van Audekerke, J., Bergwerf, I., Kane, J. X., Delgado Y Palacios, R., Veraart, J., Jeurissen, B., Raber, K., Von Hörsten, S., Ponsaerts, P., Sijbers, J., Leergaard, T. B., and Van Der Linden, A., “Identification and characterization of Huntington related pathology: an in vivo DKI imaging study”, NeuroImage, vol. 63, no. 2, pp. 653-662, 2012.
I. Blockx, Verhoye, M., Van Audekerke, J., Bergwerf, I., Kane, J. X., Delgado Y Palacios, R., Veraart, J., Jeurissen, B., Raber, K., Von Hörsten, S., Ponsaerts, P., Sijbers, J., Leergaard, T. B., and Van Der Linden, A., “Identification and characterization of Huntington related pathology: an in vivo DKI imaging study”, NeuroImage, vol. 63, no. 2, pp. 653-662, 2012.
Y. D. Reijmer, Leemans, A., Heringa, S. M., Wielaard, I., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Improved sensitivity to cerebral white matter abnormalities in Alzheimer's disease with spherical deconvolution based tractography.”, PloS one, vol. 7, no. 8, p. e44074, 2012.
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., “Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.”, NeuroImage, vol. 59, pp. 957-67, 2012.
2011
Z. Mai, Hanel, R., Batenburg, K. J., Verhoye, M., Scheunders, P., and Sijbers, J., “Bias field reduction by localized Lloyd-Max quantization”, Magnetic Resonance Imaging, vol. 29, no. 4, pp. 536-545, 2011.
K. J. Batenburg and Sijbers, J., “DART: A practical reconstruction algorithm for discrete tomography”, IEEE Transactions on Image Processing, vol. 20, pp. 2542-2553, 2011.PDF icon Download paper (2.12 MB)
R. Heylen, Burazerovic, D., and Scheunders, P., “Fully constrained least-squares spectral unmixing by simplex projection”, IEEE Transactions on Geoscience and Remote Sensing, vol. 49, no. 11, pp. 4112-4122, 2011.PDF icon PDF (1.11 MB)Package icon Matlab code (1.93 KB)
G. Van Gompel, Van Slambrouck, K., Defrise, M., Batenburg, K. J., De Mey, J., Sijbers, J., and Nuyts, J., “Iterative correction of beam hardening artifacts in CT”, Medical Physics, vol. 38, pp. 36-49, 2011.
R. Delgado Y Palacios, Adriaan, C., Kim, H., Verhoye, M., Poot, D. H. J., Jouke, D., Van Audekerke, J., Benveniste, H., Sijbers, J., Wiborg, O., and Van Der Linden, A., “Magnetic resonance imaging and spectroscopy reveal differential hippocampal changes in anhedonic and resilient subtypes of the chronic mild stress rat model”, Biological psychiatry, vol. 70, pp. 449-457, 2011.
J. Veraart, Poot, D. H. J., Van Hecke, W., Blockx, I., Van Der Linden, A., Verhoye, M., and Sijbers, J., “More accurate estimation of diffusion tensor parameters using diffusion kurtosis imaging”, Magnetic Resonance in Medicine, vol. 65, pp. 138-145, 2011.PDF icon Download paper (387.31 KB)
R. Heylen, Burazerovic, D., and Scheunders, P., “Nonlinear spectral unmixing by geodesic simplex volume maximization”, IEEE Journal of Selected Topics in Signal Processing, vol. 5, pp. 534-542, 2011.
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Optimal threshold selection for segmentation of dense homogeneous objects in tomographic reconstructions”, IEEE Transactions on Medical Imaging, vol. 30, pp. 980-989, 2011.PDF icon Download paper (1.59 MB)
W. J. Palenstijn, Batenburg, K. J., and Sijbers, J., “Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)”, Journal of structural biology, vol. 176, no. 2, pp. 250-253, 2011.PDF icon Download paper (527.21 KB)
J. Veraart, Leergaard, T. B., Antonsen, B. T., Van Hecke, W., Blockx, I., Jeurissen, B., Jiang, Y., Van Der Linden, A., Johnson, A. G., Verhoye, M., and Sijbers, J., “Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain”, NeuroImage, vol. 58, no. 4, pp. 975-983, 2011.
K. J. Batenburg, Van Aarle, W., and Sijbers, J., “A Semi-Automatic Algorithm for Grey Level Estimation in Tomography”, Pattern Recognition Letters, vol. 32, pp. 1395-1405, 2011.

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