Publications

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2016
D. Zanaga, Altantzis, T., Sanctorum, J., Freitag, B., and Bals, S., “An alternative approach for ζ-factor measurement using pure element nanoparticles”, Ultramicroscopy, vol. 164, pp. 11–16, 2016.
J. Fatermans, Van Aert, S., and den Dekker, A. J., “Bayesian model-order selection in electron microscopy to detect atomic columns in noisy images”, RBSM 2016, Brussels, Belgium. p. 53, 2016.
J. Veraart, Novikov, D. S., Daan, C., Ades-Aron, B., Sijbers, J., and Fieremans, E., “Denoising of diffusion MRI using random matrix theory”, NeuroImage, vol. 142, pp. 384-396, 2016.PDF icon Download paper (4.53 MB)
C. Guglielmetti, Veraart, J., Roelant, E., Mai, Z., Daans, J., Van Audekerke, J., Naeyaert, M., Vanhoutte, G., Delgado Y Palacios, R., Praet, J., Fieremans, E., Ponsaerts, P., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone-induced demyelination and spontaneous remyelination”, NeuroImage, vol. 125, pp. 363–377, 2016.
2017
J. Fatermans, Müller-Caspary, K., den Dekker, A. J., and Van Aert, S., “Detection of atomic columns from noisy STEM images”, Microscopy Conference 2017 (MC 2017), Lausanne, Switzerland. pp. 445-446, 2017.
P. Van Dyck, Froeling, M., De Smet, E., Pullens, P., Torfs, M., Verdonck, P., Sijbers, J., Parizel, P. M., and Jeurissen, B., “Diffusion Tensor Imaging of the Anterior Cruciate Ligament Graft”, Journal of Magnetic Resonance Imaging, vol. 46, no. 5, pp. 1423–1432, 2017.
P. Van Dyck, De Smet, E., Froeling, M., Verdonk, P., Torfs, M., Pullens, P., Sijbers, J., Parizel, P. M., and Jeurissen, B., “Diffusion Tensor Imaging of the Anterior Cruciate Ligament Graft”, Proc. Intl. Soc. Mag. Reson. Med. 25. p. 377, 2017.
D. Lacko, Vleugels, J., Fransen, E., Huysmans, T., De Bruyne, G., Van Hulle, M. M., Sijbers, J., and Verwulgen, S., “Ergonomic design of an EEG headset using 3D anthropometry”, Applied Ergonomics, vol. 58, pp. 128–136, 2017.
M. Mohammadian, Roine, T., Hirvonen, J., Kurki, T., Ala-Seppälä, H., Frantzén, J., Katila, A., Kyllönen, A., Maanpää, H. - R., Posti, J., Takala, R., Tallus, J., and Tenovuo, O., “High angular resolution diffusion-weighted imaging in mild traumatic brain injury”, NeuroImage: Clinical, vol. 13, pp. 174 - 180, 2017.PDF icon Download paper (848.3 KB)
2018
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “Bayesian analysis of noisy scanning transmission electron microscopy images for single atom detection”, SCANDEM 2018, Technical University of Denmark, Kgs. Lyngby, Denmark. p. 95, 2018.
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., “Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials”, IMC19, Sydney, Australia. 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “The maximum a posteriori probability rule to detect single atoms from low signal-to-noise ratio scanning transmission electron microscopy images”, IMC19, Sydney, Australia. 2018.
B. Auer, Könik, A., Fromme, T. J., Kalluri, K., De Beenhouwer, J., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary evaluation of surface mesh modeling of system geometry, anatomy phantom, and source activity for GATE simulations”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
B. Auer, Könik, A., Fromme, T. J., Kalluri, K., De Beenhouwer, J., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary evaluation of surface mesh modeling of system geometry, anatomy phantom, and source activity for GATE simulations”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
B. Auer, De Beenhouwer, J., Fromme, T. J., Kalluri, K., Goding, J. C., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary investigation of design parameters of an innovative multi- pinhole system dedicated to brain SPECT imaging”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
B. Auer, De Beenhouwer, J., Fromme, T. J., Kalluri, K., Goding, J. C., Zubal, G. I., Furenlid, L. R., and King, M. A., “Preliminary investigation of design parameters of an innovative multi- pinhole system dedicated to brain SPECT imaging”, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Sydney, Australia, 2018.
A. Könik, De Beenhouwer, J., Mukherjee, J. M., Kalluri, K., Banerjee, S., Zeraatkar, N., Fromme, T. J., and King, M. A., “Simulations of a Multipinhole SPECT Collimator for Clinical Dopamine Transporter (DAT) Imaging”, IEEE Transactions on Radiation and Plasma Medical Sciences, vol. 2, pp. 444-451, 2018.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Single Atom Detection from Low Contrast-to-Noise Ratio Electron Microscopy Images”, Phys. Rev. Lett., vol. 121, p. 056101, 2018.
2019
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Atom column detection from STEM images using the maximum a posteriori probability rule”, MC 2019, Berlin, Germany. 2019.
J. Fatermans, den Dekker, A. J., and Van Aert, S., “Atom detection from electron microscopy images”, RBSM 2019, Louvain-la-Neuve, Belgium. p. 15, 2019.
J. Weissenböck, Fröhler, B., Gröller, E., Sanctorum, J., De Beenhouwer, J., Sijbers, J., Karunakaran, S. Ayalur, Hoeller, H., Kastner, J., and Heinzl, C., “An Interactive Visual Comparison Tool for 3D Volume Datasets represented by Nonlinearly Scaled 1D Line Plots through Space-filling Curves”, in 9th Conference on Industrial Computed Tomography, Padova, Italy, 2019.PDF icon Download paper (1.22 MB)
B. Auer, Zeraatkar, N., De Beenhouwer, J., Kalluri, K., Kuo, P. H., Furenlid, L. R., and King, M. A., “Investigation of a Monte Carlo simulation and an analytic-based approach for modeling the system response for clinical I-123 brain SPECT imaging”, in 15th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2019, vol. 11072, pp. 187 – 190.
B. Auer, Kalluri, K., De Beenhouwer, J., Zeraatkar, N., Könik, A., Kuo, P. H., Furenlid, L. R., and King, M. A., “Investigation of keel versus knife edge pinhole profiles for a next-generation SPECT system dedicated to clinical brain imaging”, 2nd International Conference on Monte Carlo Techniques for Medical Applications. 2019.
J. Fatermans, Van Aert, S., and den Dekker, A. J., “The maximum a posteriori probability rule for atom column detection from HAADF STEM images”, Ultramicroscopy, vol. 201, pp. 81-91, 2019.
S. Scataglini, Danckaers, F., Haelterman, R., Huysmans, T., and Sijbers, J., “Moving Statistical Body Shape Models Using Blender”, in Proceedings of the 20th Congress of the International Ergonomics Association (IEA 2018), Cham, 2019, pp. 28–38.

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