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I. J. Tsang, “Pattern Recognition, Neighborhood Codes, and Lattice Animals”, University of Antwerp, Antwerp, 2000.
I. J. Tsang, Tsang, I. R., and Van Dyck, D., “Image processing using neighbourhood coding”, Pattern Recognition Letters, vol. 20, pp. 1279-1286, 1999.
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W. Van Aarle, Ludwig, W., King, A., and Penumadu, D., “An accurate projection model for diffraction image formation and inversion using a polychromatic cone beam”, Journal of Applied Crystallography, vol. 48, pp. 334-343, 2015.
W. Van Aarle, Cant, J., De Beenhouwer, J., and Sijbers, J., “Discrete tomographic reconstruction from deliberately motion blurred X-ray projections”, in 6th Conference on Industrial Computed Tomography, Wels, Austria, 2016, pp. 1-6.PDF icon Download paper (444.66 KB)
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Threshold Selection for Segmentation of Dense Objects in Tomograms”, in International Symposium on Visual Computing, Berlin Heidelberg, 2008, vol. 5358, pp. 700-709.
W. Van Aarle, Van Gompel, G., Batenburg, K. J., Van de Casteele, E., and Sijbers, J., “A 3-dimensional discrete tomography approach for superresolution micro-CT images: application to foams”, in The first international conference on image formation in X-ray computed tomography, 2010, pp. 45-48.PDF icon Download full paper (816.87 KB)
W. Van Aarle, “Tomographic segmentation and discrete tomography for quantitative analysis of transmission tomography data”, University of Antwerp, Antwerp, Belgium, 2012.PDF icon Download PhD thesis (39.16 MB)
W. Van Aarle, Batenburg, K. J., Van Gompel, G., Van de Casteele, E., and Sijbers, J., “Super-resolution for computed tomography based on discrete tomography”, IEEE Transactions on Image Processing, vol. 23, no. 3, pp. 1181 - 1193, 2014.PDF icon Download paper (2.24 MB)
W. Van Aarle, Ghysels, P., Sijbers, J., and Vanroose, W., “Memory access optimization for iterative tomography on many-core architectures”, in The 12th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2013, pp. 364-367.PDF icon fully3d_wvaarle.pdf (2.8 MB)
W. Van Aarle, van der Maar, S., Batenburg, K. J., and Sijbers, J., “Computed tomography on all scales using the ASTRA toolbox”, Liege Image Days 2008: Medical Imaging. 2008.PDF icon wvaarle_poster.pdf (610.59 KB)
W. Van Aarle, Palenstijn, W. J., De Beenhouwer, J., Altantzis, T., Bals, S., Batenburg, K. J., and Sijbers, J., “The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography”, Ultramicroscopy, vol. 157, pp. 35–47, 2015.PDF icon Download paper (3.47 MB)
W. Van Aarle, Crombecq, K., Couckuyt, I., Batenburg, K. J., and Sijbers, J., “Efficient parameter estimation for discrete tomography using adaptive modeling”, in 11th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2011.PDF icon Download full paper (853.19 KB)
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Optimal threshold selection for segmentation of dense homogeneous objects in tomographic reconstructions”, IEEE Transactions on Medical Imaging, vol. 30, pp. 980-989, 2011.PDF icon Download paper (1.59 MB)
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Automatic parameter estimation for the Discrete Algebraic Reconstruction Technique (DART)”, IEEE Transactions on Image Processing, vol. 21, no. 11, pp. 4608-4621, 2012.PDF icon Download paper (3.91 MB)
W. Van Aarle, Palenstijn, W. J., Cant, J., Janssens, E., Bleichrodt, F., Dabravolski, A., De Beenhouwer, J., Batenburg, K. J., and Sijbers, J., “Fast and Flexible X-ray Tomography Using the ASTRA Toolbox”, Optics Express, vol. 24, pp. 25129-25147, 2016.PDF icon Download paper (8.34 MB)
S. Van Aert, De Backer, A., Martinez, G. T., den Dekker, A. J., Van Dyck, D., Bals, S., and Van Tendeloo, G., “Advanced electron crystallography through model-based imaging”, IUCrJ, vol. 3, 2016.
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., Friedrich, T., Lobato, I., O'Leary, C. M., Varambhia, A., Altantzis, T., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “3D Atomic Scale Quantification of Nanostructures and their Dynamics Using Model-based STEM”, Microscopy & Microanalysis 2020 (online), Milwaukee, United States. 2020.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., “Quantifying 3D atomic structures of nanomaterials and their dynamics using model-based scanning transmission electron microscopy”, Spring Meeting of the EMRS, Nice, France. 2019.
S. Van Aert, De wael, A., Fatermans, J., Lobato, I., De Backer, A., Jones, L., den Dekker, A. J., and Nellist, P. D., “Strategies for quantifying 3D atomic structures of nanomaterials and their dynamics using dose-efficient ADF STEM”, PICO2019, Vaalsbroek, The Netherlands. 2019.
S. Van Aert, De Backer, A., De wael, A., Fatermans, J., E Irmak, A., Friedrich, T., Lobato, I., Jones, L., den Dekker, A. J., Nellist, P. D., and Bals, S., “Strategies for quantifying the 3D atomic structure and the dynamics of nanomaterials using model-based STEM”, Virtual MRS Spring/ Fall Meeting, Boston, United States (online). 2020.
S. Van Aert, Fatermans, J., De Backer, A., van den Bos, K. H. W., O'Leary, C. M., Müller-Caspary, K., Jones, L., Lobato, I., Béché, A., den Dekker, A. J., Bals, S., and Nellist, P. D., “Maximising dose efficiency in quantitative STEM to reveal the 3D atomic structure of nanomaterials”, IMC19, Sydney, Australia. 2018.
J. Van Audekerke, Verhoye, M., Peeters, R. R., Sijbers, J., and Van Der Linden, A., “Special designed RF-antenna with integrated non-invasive carbon electrodes for simultaneous MRI and EEG acquisition at 7T”, Magnetic Resonance Imaging, vol. 18, pp. 887-891, 2000.PDF icon Download full paper (179 KB)
J. Van Audekerke, Sijbers, J., Michiels, I., Verhoye, M., Peeters, R. R., and Van Der Linden, A., “Novel design of an RF-antenna with integrated EEG electrodes for combined EEG and fMRI in animals”, in 16th annual meeting: Magnetic Resonance Materials in Physics, Biology, and Medicine, Sevilla, Spain, 1999.
J. Van Audekerke, Verhoye, M., Sijbers, J., DeVoogd, T. J., Smulders, T., Newman, S. W., and Van Der Linden, A., “Imaging birds .. in a bird cage: In vivo MRI microscopy of the canary brain at 7T”, in Proceedings of International Society for Magnetic Resonance in Medicine: Sixth Annual Meeting, 1998, vol. 2, pp. 162-163.
N. Van Camp, Vreys, R., Van Laere, K., Lauwers, E., Beque, D., Verhoye, M., Casteels, C., Verbruggen, A., Debyser, Z., Mortelmans, L., Sijbers, J., Nuyts, J., Baekelandt, V., and Van Der Linden, A., “Morphologic and functional changes in the unilateral 6-hydroxydopamine lesion rat model for Parkinson's disease discerned with microSPECT and quantitative MRI.”, Magnetic Resonance Materials in Physics, Biology and Medicine, vol. 23, no. 2, pp. 65-75, 2010.

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