Publications

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Thesis
M. Naeyaert, “Strategies for efficient acquisition and reconstruction of structural and quantitative MRI”, 2021.
M. Van Dael, “Online quality control of fruit and vegetables using X-ray imaging”, 2017.
V. Nguyen, “Advances in biplanar X-ray imaging: calibration and 2D/3D registration”, 2022.PDF icon Download PhD thesis (8.02 MB)
Patent
M. Van Dael, Verboven, P., Nicolai, B., Dhaene, J., Van Hoorebeke, L., and Sijbers, J., “Automated quality control and selection ”, U.S. Patent PCT/EP2016/0557182016.
Journal Article
M. Siqueira Pinto, Winzeck, S., Kornaropoulos, E. N., Richter, S., Paolella, R., Correia, M. M., Glocker, B., Williams, G., Vik, A., Posti, J., Håberg, A. Kristine, Stenberg, J., Guns, P. - J., den Dekker, A. J., Menon, D. K., Sijbers, J., Van Dyck, P., and Newcombe, V. F. J., “Use of support vector machines approach via ComBat harmonized diffusion tensor imaging for the diagnosis and prognosis of mild traumatic brain injury: a CENTER-TBI study”, Journal of Neurotrauma, 2023.
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging”, Frontiers in Neuroscience, pp. 1-18, 2022.PDF icon Download paper (5.96 MB)
N. J. Forde, Ronan, L., Suckling, J., Scanlon, C., Neary, S., Holleran, L., Leemans, A., Tait, R., Rua, C., Fletcher, P. C., Jeurissen, B., Dodds, C. M., Miller, S. R., Bullmore, E. T., McDonald, C., Nathan, P. J., and Cannon, D. M., “Structural neuroimaging correlates of allelic variation of the BDNF val66met polymorphism.”, NeuroImage, vol. 90, pp. 280-9, 2014.
N. J. Forde, Ronan, L., Suckling, J., Scanlon, C., Neary, S., Holleran, L., Leemans, A., Tait, R., Rua, C., Fletcher, P. C., Jeurissen, B., Dodds, C. M., Miller, S. R., Bullmore, E. T., McDonald, C., Nathan, P. J., and Cannon, D. M., “Structural neuroimaging correlates of allelic variation of the BDNF val66met polymorphism.”, NeuroImage, vol. 90, pp. 280-9, 2014.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Single Atom Detection from Low Contrast-to-Noise Ratio Electron Microscopy Images”, Phys. Rev. Lett., vol. 121, p. 056101, 2018.
G. Liu, Nath, T., Guo, Z., Linneweber, G., Claeys, A., Li, J., Bengochea, M., De Backer, S., Weyn, B., Sneyders, M., Nicasy, H., Yu, P., Scheunders, P., and Hassan, B., “A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila”, Plos Computational Biology, vol. 14, no. 8, p. e1006410, 2018.
G. Liu, Nath, T., Guo, Z., Linneweber, G., Claeys, A., Li, J., Bengochea, M., De Backer, S., Weyn, B., Sneyders, M., Nicasy, H., Yu, P., Scheunders, P., and Hassan, B., “A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila”, Plos Computational Biology, vol. 14, no. 8, p. e1006410, 2018.
M. Van Dael, Lebotsa, S., Herremans, E., Verboven, P., Sijbers, J., Opara, U. L., Cronje, U. L., and Nicolai, B., “A segmentation and classification algorithm for online detection of internal disorders in citrus using X-ray radiographs”, Postharvest Biology and Technology, vol. 112, pp. 205-214, 2016.
E. Ribeiro Sabidussi, Klein, S., Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., “Recurrent Inference Machines as inverse problem solvers for MR relaxometry”, Medical Image Analysis, vol. 74, pp. 1-11, 2021.PDF icon Download paper (2.26 MB)
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., de Nijs, B., van Huis, M. A., Sánchez-Iglesias, A., Liz-Marzán, L. M., van Blaaderen, A., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies.”, Nanoscale, vol. 8, no. 1, pp. 292-9, 2016.
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., van Nijs, B., van Huis, M. A., van Blaaderen, A., Sánchez-Iglesias, A., Liz-Marzán, L. M., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies”, Nanoscale, vol. 8, no. 1, pp. 292-299, 2015.
M. Roshani, Phan, G., Faraj, R. Hassan, Phan, N. - H., Roshani, G. Hossein, Corniani, E., and Nazemi, E., “Proposing a gamma radiation based intelligent system for simultaneous analyzing and detecting type and amount of petroleum by-products”, Nuclear Engineering and Technology, 2020.PDF icon 1-s2.0-s1738573320308779-main.pdf (1.38 MB)
S. Jillings, Pechenkova, E. V., Tomilovskaya, E., Rukavishnikov, I., Jeurissen, B., Van Ombergen, A., Nosikova, I., Rumshiskaya, A., Litvinova, L., Annen, J., De Laet, C., Schoenmaekers, C., Sijbers, J., Petrovichev, V., Sunaert, S., Parizel, P. M., Sinitsyn, V., P Eulenburg, zu, Laureys, S. S. L., Demertzi, A., and Wuyts, F. L., “Prolonged microgravity induces reversible and persistent changes on human cerebral connectivity”, Communications Biology, vol. 6, no. 46, 2023.
J. Sanctorum, Van Wassenbergh, S., Nguyen, V., De Beenhouwer, J., Sijbers, J., and Dirckx, J. J. J., “Projection-angle-dependent distortion correction in high-speed image-intensifier-based x-ray computed tomography”, Measurement Science and Technology, vol. 32, no. 035404, pp. 1-11, 2021.
J. Kenney, McInerney, S., McPhilemy, G., Najt, P., Scanlon, C., Arndt, S., Scherz, E., Byrne, F., Leemans, A., Jeurissen, B., Donohoe, G., Hallahan, B., McDonald, C., and Cannon, D., “P. 3.033 Lateralisation of the arcuate fasciculus in psychosis & the role in verbal learning & auditory verbal hallucinations”, European Neuropsychopharmacology, vol. 26, no. 1, pp. S76–S77, 2016.
M. Van Dael, Rogge, S., Verboven, P., Saeys, W., Sijbers, J., and Nicolai, B., “Online Tomato Inspection Using X-Ray Radiographies and 3- Dimensional Shape Models”, Chemical Engineering Transactions, vol. 44, pp. 37-42, 2015.
M. Naeyaert, Roose, D., Mai, Z., Keliris, A. J., Sijbers, J., Van Der Linden, A., and Verhoye, M., “Normalized Averaged Range (nAR), a Robust Quantification Method for MPIO-content”, Journal of Magnetic Resonance, vol. 300, pp. 18-27, 2019.
P. Scheunders, De Backer, S., and Naud, A., “Non-linear mapping for feature extraction”, Lecture Notes in Computer Science, vol. 1451, pp. 823-830, 1998.
S. De Backer, Naud, A., and Scheunders, P., “Non-linear Dimensionality Reduction Techniques for Unsupervised Feature Extraction”, Pattern Recognition Letters, vol. 19, pp. 711-720, 1998.
T. Van De Looverbosch, Bhuiyan, H. Rahman, Verboven, P., Dierick, M., Van Loo, D., De Beenhouwer, J., Sijbers, J., and Nicolai, B., “Nondestructive internal quality inspection of pear fruit by X-ray CT using machine learning”, Food Control, vol. 113, no. 107170, pp. 1-13, 2020.
T. Van De Looverbosch, Raeymaekers, E., Verboven, P., Sijbers, J., and Nicolai, B., “Non-destructive internal disorder detection of Conference pears by semantic segmentation of X-ray CT scans using deep learning”, Expert Systems with Applications, vol. 176, no. 114925, pp. 1-12, 2021.

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