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Journal Article
P. Paramonov, Francken, N., Renders, J., Iuso, D., Elberfeld, T., De Beenhouwer, J., and Sijbers, J., “CAD-ASTRA: A versatile and efficient mesh projector for X-ray tomography with the ASTRA-toolbox”, Optics Express, vol. 32, no. 3, pp. 3425-3439, 2024.PDF icon Download paper (11.29 MB)
F. Danckaers, Huysmans, T., Van Dael, M., Verboven, P., Nicolai, B., and Sijbers, J., “Building a Statistical Shape Model of the Apple from Corresponded Surfaces”, Chemical Engineering Transactions, vol. 44, pp. 49-54, 2015.PDF icon Download paper (696.94 KB)
F. Danckaers, Huysmans, T., Van Dael, M., Verboven, P., Nicolai, B., and Sijbers, J., “Building 3D Statistical Shape Models of Horticultural Products”, Food and Bioprocess Technology, vol. 10, no. 11, pp. 2100-2112, 2017.PDF icon Download paper (1.73 MB)
A. Van Ombergen, Jillings, S., Jeurissen, B., Tomilovskaya, E., Rumshiskaya, A., Litvinova, L., Nosikova, I., Pechenkova, E. V., Rukavishnikov, I., Manko, O., Danylichev, S., R. Rühl, M., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Sinitsyn, V., Laureys, S. S. L., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Brain ventricular volume changes induced by long-duration spaceflight”, Proceedings of the National Academy of Sciences, vol. 116, no. 21, pp. 10531-10536, 2019.
A. Van Ombergen, Jillings, S., Jeurissen, B., Tomilovskaya, E., Rühl, M., Rumshiskaya, A., Nosikova, I., Litvinova, L., Annen, J., Pechenkova, E. V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Sinitsyn, V., Laureys, S. S. L., Sijbers, J., Eulenburg, Pzu, and Wuyts, F. L., “Brain Tissue–Volume Changes in Cosmonauts”, New England Journal of Medicine, vol. 379, no. 17, pp. 1678 - 1680, 2018.
A. Doroshin, Jillings, S., Jeurissen, B., Tomilovskaya, E., Pechenkova, E. V., Nosikova, I., Rumshiskaya, A., Litvinova, L., Rukavishnikov, I., De Laet, C., Schoenmaekers, C., Sijbers, J., Laureys, S. S. L., Petrovichev, V., Van Ombergen, A., Annen, J., Sunaert, S., Parizel, P. M., Sinitsyn, V., Eulenburg, Pzu, Osipowicz, K., and Wuyts, F. L., “Brain Connectometry Changes in Space Travelers After Long-Duration Spaceflight”, Front. Neural Circuits, vol. 16, 2022.
Y. - T. Ling, Cools, S., Bogdanowicz, J., Fleischmann, C., De Beenhouwer, J., Sijbers, J., and Vandervorst, W., “A Bottom-Up Volume Reconstruction Method for Atom Probe Tomography”, Microscopy and Microanalysis, vol. 28, no. 4, pp. 1-14, 2022.
Z. Mai, Hanel, R., Batenburg, K. J., Verhoye, M., Scheunders, P., and Sijbers, J., “Bias field reduction by localized Lloyd-Max quantization”, Magnetic Resonance Imaging, vol. 29, no. 4, pp. 536-545, 2011.
Y. Zhang, Duijster, A., and Scheunders, P., “A Bayesian Restoration Approach for Hyperspectral Images”, IEEE Transactions on Geoscience and Remote Sensing, vol. 50, no. 9, pp. 3453-3462, 2012.
A. Karami, Heylen, R., and Scheunders, P., “Band-specific Shearlet-based Hyperspectral Image Noise Reduction”, IEEE Transaction Geosciences and Remote Sensing , vol. 53, no. 9, 2015.
S. De Backer, Kempeneers, P., Debruyn, W., and Scheunders, P., “A Band Selection Technique for Spectral Classification”, IEEE Geoscience and Remote Sensing Letters, vol. 2, pp. 319-323, 2005.
W. Van Aarle, Batenburg, K. J., and Sijbers, J., “Automatic parameter estimation for the Discrete Algebraic Reconstruction Technique (DART)”, IEEE Transactions on Image Processing, vol. 21, no. 11, pp. 4608-4621, 2012.PDF icon Download paper (3.91 MB)
J. Sijbers, Vanrumste, B., Van Hoey, G., Boon, P., Verhoye, M., Van Der Linden, A., and Van Dyck, D., “Automatic localization of EEG electrode markers within 3D MR data”, Magnetic Resonance Imaging, vol. 18, pp. 485-488, 2000.PDF icon Download paper (178.74 KB)
V. Nguyen, Alves Pereira, L. F., Liang, Z., Mielke, F., Van Houtte, J., Sijbers, J., and De Beenhouwer, J., “Automatic landmark detection and mapping for 2D/3D registration with BoneNet”, Frontiers Veterinary Science, 2022.PDF icon Download paper (2.51 MB)
G. Thoonen, Nys, B., Haegen, V. Y., Roy, D. G., and Scheunders, P., “Automatic forensic analysis of automotive paints using optical microscopy”, Forensic Science International, vol. 259, pp. 210-220, 2016.
J. Sijbers, Poot, D. H. J., den Dekker, A. J., and Pintjens, W., “Automatic estimation of the noise variance from the histogram of a magnetic resonance image”, Physics in Medicine and Biology, vol. 52, pp. 1335-1348, 2007.PDF icon Download paper (297.18 KB)
T. Huysmans, Sijbers, J., and Verdonk, B., “Automatic Construction of Correspondences for Tubular Surfaces”, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 32, pp. 636-651, 2010.PDF icon Download paper (3.46 MB)
A. Presenti, Liang, Z., Alves Pereira, L. F., Sijbers, J., and De Beenhouwer, J., “Automatic anomaly detection from X-ray images based on autoencoder”, Nondestructive Testing and Evaluation, vol. 37, no. 5, 2022.
P. Lopes, Van Herck, P., Ooms, J., Van Mieghem, N., Wirix-Speetjens, R., Sijbers, J., Vander Sloten, J., and Bosmans, J., “Automated Mitral Valve Assessment for Transcatheter Mitral Valve Replacement (TMVR) Planning”, Frontiers in Bioengineering and Biotechnology, vol. 16, pp. 1-13, 2022.PDF icon Download paper (2.19 MB)
J. Grammens, Van Haver, A., Lumban-Gaol, I., Danckaers, F., Verdonck, P., and Sijbers, J., “Automated landmark annotation for morphometric analysis of distal femur and proximal tibia”, Journal of Imaging, vol. 10, no. 4, 2024.PDF icon Download paper (2.06 MB)
B. Jeurissen, Leemans, A., and Sijbers, J., “Automated correction of improperly rotated diffusion gradient orientations in diffusion-weighted MRI”, Medical Image Analysis, vol. 18, pp. 953-962, 2014.
G. Van de Wouwer, Weyn, B., Scheunders, P., Jacob, W., Van Marck, E., and Van Dyck, D., “Automated chromatin-texture based diagnosis of carcinoma nuclei”, Journal of Microscopy, vol. 197, pp. 25-35, 2000.
B. Weyn, Van de Wouwer, G., Van Daele, A., Scheunders, P., Van Dyck, D., Van Marck, E., and Jacob, W., “Automated breast tumour diagnosis and grading based on wavelet chromatin texture description”, Cytometry, vol. 33, pp. 32-40, 1998.
J. Gonnissen, De Backer, A., den Dekker, A. J., Sijbers, J., and Van Aert, S., “Atom-counting in High Resolution Electron Microscopy: TEM or STEM - that’s the question”, Ultramicroscopy, vol. 147, pp. 112–120, 2017.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Atom column detection from simultaneously acquired ABF and ADF STEM images”, Ultramicroscopy, vol. 219, p. 113046, 2020.

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