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Journal Article
M. Roshani, Phan, G., Roshani, G. Hossein, Hanus, R., Corniani, E., and Nazemi, E., “Combination of X-ray tube and GMDH neural network as a nondestructive and potential technique for measuring characteristics of gas-oil–water three phase flows”, Measurement, vol. 168, 2021.
S. Aerts, Werthen-Brabants, L., Khan, H., Giraldo, D., De Brouwer, E., Geys, L., Popescu, V., Sijbers, J., Woodruff, H. C., Dhaene, T., Deschrijver, D., Van Wijmeersch, B., Lambin, P., and Peeters, L. M., “Combining magnetic resonance imaging and evoked potentials enhances machine learning prediction of multiple sclerosis disability worsening”, Frontiers in Immunology, vol. 17, 2026.
W. Van Hecke, Leemans, A., De Backer, S., Jeurissen, B., Parizel, P. M., and Sijbers, J., “Comparing isotropic and anisotropic smoothing for voxel-based DTI analyses: A simulation study”, Human Brain Mapping, vol. 31, pp. 98-114, 2010.
P. Scheunders, “Comparison of clustering algorithms applied to colour image quantization”, Pattern Recognition Letters, vol. 18, pp. 1379-1384, 1997.
S. De Backer and Scheunders, P., “A competitive elliptical clustering algorithm”, Pattern Recognition Letters, vol. 20, pp. 1141-1147, 1999.
N. Van Camp, Blockx, I., Camon, L., de Vera, N., Verhoye, M., Veraart, J., Van Hecke, W., Martinez, E., Guadelupe, S., Sijbers, J., Planas, A., and Van Der Linden, A., “A complementary DTI-histological study in a model of Huntingtons disease”, Neurobiology of Aging, vol. 33, pp. 945-959, 2012.
J. Veraart, Rajan, J., Peeters, R. R., Leemans, A., Sunaert, S., and Sijbers, J., “Comprehensive framework for accurate diffusion MRI parameter estimation”, Magnetic Resonance in Medicine, vol. 81, no. 4, pp. 972-984, 2013.PDF icon ISMRM 2013 poster (476.78 KB)
E. Bettens, Scheunders, P., Van Dyck, D., Moens, L., and Osta, V. P., “Computer Analysis of Two-Dimensional Electrophoresis Gels : A New Segmentation and Modeling Algorithm”, Electrophoresis, vol. 18, pp. 792-798, 1997.
B. Weyn, Van de Wouwer, G., Samir, G. K., Van Daele, A., Scheunders, P., Van Marck, E., and Jacob, W., “Computer-assisted differential diagnosis of malignant mesothelioma based on syntactic structure analysis”, Cytometry, vol. 35, pp. 23-29, 1999.
P. Scheunders, De Clerck, N., and Wille, J., “Computerized image storage and analysis of contracting cardiac myocytes”, Journal of Computer Assisted Microscopy, vol. 6, pp. 77-83, 1994.
K. G. Schilling, Howard, A. F. D., Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2561 - 2582, 2025.
K. G. Schilling, Grussu, F., Ianus, A., Hansen, B., Howard, A. F. D., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Jelescu, I. O., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2535 - 2560, 2025.
I. O. Jelescu, Grussu, F., Ianus, A., Hansen, B., Barrett, R. L. C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A. F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B. C., Hertanu, A., Jeurissen, B., Verhoye, M., Frydman, L., van de Looij, Y., Hike, D., Dunn, J. F., Miller, K., Landman, B. A., Shemesh, N., Anderson, A., McKinnon, E., Farquharson, S., Dell'Acqua, F., Pierpaoli, C., Drobnjak, I., Leemans, A., Harkins, K. D., Descoteaux, M., Xu, D., Huang, H., Santin, M. D., Grant, S. C., Obenaus, A., Kim, G. S., Wu, D., Le Bihan, D., Blackband, S. J., Ciobanu, L., Fieremans, E., Bai, R., Leergaard, T. B., Zhang, J., Dyrby, T. B., G. Johnson, A., Cohen‐Adad, J., Budde, M. D., and Schilling, K. G., “Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging”, Magnetic Resonance in Medicine, vol. 93, no. 6, pp. 2507 - 2534, 2025.
J. Veraart, Van Hecke, W., and Sijbers, J., “Constrained Maximum Likelihood Estimation of the Diffusion Kurtosis Tensor Using a Rician Noise Model”, Magnetic Resonance in Medicine, vol. 66, pp. 678-686, 2011.PDF icon Download paper (712.6 KB)
J. Morez, Sijbers, J., Vanhevel, F., and Jeurissen, B., “Constrained spherical deconvolution of non-spherically sampled diffusion MRI data”, Human Brain Mapping, vol. 42, pp. 521–538, 2020.PDF icon Download paper (5.87 MB)
U. Roine, Salmi, J., Roine, T., Nieminen-von Wendt, T., Leppämäki, S., Rintahaka, P., Tani, P., Leemans, A., and Sams, M., “Constrained spherical deconvolution-based tractography and tract-based spatial statistics show abnormal microstructural organization in Asperger syndrome”, Molecular Autism, vol. 6, p. 4, 2015.PDF icon Download paper (1.75 MB)
W. Van Hecke, Sijbers, J., De Backer, S., Poot, D. H. J., Parizel, P. M., and Leemans, A., “On the construction of a ground truth framework for evaluating voxel-based diffusion tensor MRI analysis methods”, NeuroImage, vol. 46, pp. 692-707, 2009.PDF icon Download paper (4.14 MB)
W. Van Hecke, Sijbers, J., D'Agostino, E., Maes, F., De Backer, S., Vandervliet, E., Parizel, P. M., and Leemans, A., “On the construction of an inter-subject diffusion tensor magnetic resonance atlas of the healthy human brain”, NeuroImage, vol. 43, pp. 69-80, 2008.PDF icon Download paper (3.34 MB)
Z. Mahmood, Akhter, M. A., Thoonen, G., and Scheunders, P., “Contextual Subpixel Mapping of Hyperspectral Images Making Use of a High Resolution Color Image”, IEEE JSTARS, Journal of Selected Topics in Applied Earth Observations and Remote Sensing, vol. 6, no. 2, pp. 779 - 791, 2013.
W. Van Hecke, Nagels, G., Leemans, A., Vandervliet, E., Sijbers, J., and Parizel, P. M., “Correlation of cognitive dysfunction and diffusion tensor MRI measures in patients with mild and moderate multiple sclerosis”, Journal of magnetic resonance imaging, vol. 31, pp. 1492-1498, 2010.
A. Demertzi, Van Ombergen, A., Tomilovskaya, E., Jeurissen, B., Pechenkova, E. V., Di Perri, C., Litvinova, L., Amico, E., Rumshiskaya, A., Rukavishnikov, I., Sijbers, J., Sinitsyn, V., Kozlovskaya, I. B., Sunaert, S., Parizel, P. M., Van de Heyning, P. H., Laureys, S. S. L., and Wuyts, F. L., “Cortical reorganization in an astronaut’s brain after long-duration spaceflight”, Brain Structure and Function, vol. 221, no. 5, pp. 2873–2876, 2016.PDF icon Download paper (820.49 KB)
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., “The costs and benefits of estimating T1 of tissue alongside cerebral blood flow and arterial transit time in pseudo-continuous arterial spin labeling”, NMR in Biomedicine, vol. 33, no. 12, pp. 1-17, 2020.PDF icon Download paper (16.44 MB)
T. Elberfeld, Fröhler, B., Heinzl, C., Sijbers, J., and De Beenhouwer, J., “cuPARE: Parametric Reconstruction of Curved Fibres from Glass fibre-reinforced Composites”, Nondestructive Testing and Evaluation, 2022.PDF icon Download paper (9.66 MB)
J. Merckx, den Dekker, A. J., Sijbers, J., and De Beenhouwer, J., “DAMMER: Direct Adaptive Multi-resolution MEsh Reconstruction from X-ray measurements”, IEEE Transactions on Computational Imaging , vol. 11, pp. 926 - 941, 2025.
K. Zarei Zefreh, Van Aarle, W., Batenburg, K. J., and Sijbers, J., “DART: a new approach for super-resolution reconstruction of license plates”, Journal of Electronic Imaging, vol. 22, no. 4, 2013.PDF icon Download paper (2.03 MB)

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