Publications

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2023
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Klein, S., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “ADEPT: Accurate Diffusion EPI with multi-contrast shoTs”, Magnetic Resonance in Medicine, vol. 89, no. 1, pp. 396-410, 2023.PDF icon Download paper (5.82 MB)
E. Ribeiro Sabidussi, Klein, S., Jeurissen, B., and Poot, D. H. J., “dtiRIM: A generalisable deep learning method for diffusion tensor imaging”, Neuroimage, vol. 269, 2023.PDF icon Download paper (5.11 MB)
B. Shafieizargar, Byanju, R., Sijbers, J., Klein, S., den Dekker, A. J., and Poot, D. H. J., “Systematic review of reconstruction techniques for accelerated quantitative MRI”, Magnetic Resonance in Medicine, vol. 90, no. 3, pp. 1172-1208, 2023.PDF icon Download paper (2.91 MB)
2022
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping”, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “To shift or to rotate? Comparison of acquisition strategies for multi-slice super-resolution magnetic resonance imaging”, Frontiers in Neuroscience, pp. 1-18, 2022.PDF icon Download paper (5.96 MB)
2021
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Accelerated multi-shot diffusion weighted imaging with joint estimation of diffusion and phase parameters”, Magn Reson Mater Phy, vol. 34. pp. S57-S58, 2021.
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “Comparison of MR acquisition strategies for super-resolution reconstruction using the Bayesian Mean Squared Error”, in International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, 2021.
B. Shafieizargar, Jeurissen, B., Poot, D. H. J., den Dekker, A. J., and Sijbers, J., “Multi-contrast multi-shot EPI for accelerated diffusion MRI”, in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2021, pp. 3869-3872.
E. Ribeiro Sabidussi, Klein, S., Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., “Recurrent Inference Machines as inverse problem solvers for MR relaxometry”, Medical Image Analysis, vol. 74, pp. 1-11, 2021.PDF icon Download paper (2.26 MB)
E. Ribeiro Sabidussi, Caan, M., Bazrafkan, S., den Dekker, A. J., Sijbers, J., Niessen, W. J., and Poot, D. H. J., “Recurrent Inference Machines as Inverse Problem Solvers for MR Relaxometry”, in MIDL 2021 - Medical Imaging with Deep Learning, 2021.
M. Nicastro, Jeurissen, B., Beirinckx, Q., Smekens, C., Poot, D. H. J., Sijbers, J., and den Dekker, A. J., “Rotated or shifted sets of multi-slice MR images for super-resolution reconstruction? A Bayesian answer”, Magn Reson Mater Phy (ESMRMB), vol. 34. pp. S56-S57, 2021.
2020
Q. Beirinckx, Ramos-Llordén, G., Jeurissen, B., Poot, D. H. J., Parizel, P. M., Verhoye, M., Sijbers, J., and den Dekker, A. J., “Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study”, Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.PDF icon Download paper (final author version) (2.15 MB)
M. Nicastro, Beirinckx, Q., Bladt, P., Jeurissen, B., Klein, S., Sijbers, J., Poot, D. H. J., and den Dekker, A. J., “Optimal design of a T1 super-resolution reconstruction experiment: a simulation study”, 12th Annual Meeting of the ISMRM Benelux Chapter. 2020.PDF icon Download abstract (810.88 KB)
2019
E. Ribeiro Sabidussi, Nicastro, M., Bazrafkan, S., Beirinckx, Q., Jeurissen, B., Sijbers, J., den Dekker, A. J., Klein, S., and Poot, D. H. J., “A deep learning approach to T1 mapping in quantitative MRI”, 36th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medicine & Biology (ESMRMB), Rotterdam, The Netherlands, vol. 32 (Suppl. 1). Magn Reson Mater Phy, 2019.
2017
G. Van Steenkiste, Poot, D. H. J., Jeurissen, B., den Dekker, A. J., Vanhevel, F., Parizel, P. M., and Sijbers, J., “Super-resolution T1 estimation: quantitative high resolution T1 mapping from a set of low resolution T1 weighted images with different slice orientations”, Magnetic Resonance in Medicine, vol. 77, no. 5, pp. 1818–1830, 2017.PDF icon Download paper (3.3 MB)
2016
G. Van Steenkiste, Jeurissen, B., Baete, S., den Dekker, A. J., Poot, D. H. J., Boada, F., and Sijbers, J., “High Resolution Diffusion Tensor Reconstruction from Simultaneous Multi-Slice Acquisitions in a Clinically Feasible Scan Time”, Proc. Intl. Soc. Mag. Reson. Med. 24. p. 2, 2016.
G. Van Steenkiste, Jeurissen, B., Baete, S., den Dekker, A. J., Poot, D. H. J., Boada, F., and Sijbers, J., “In vivo high resolution diffusion tensor imaging in a clinically acceptable scan time by combining super resolution reconstruction with simultaneous multi-slice acquisition”, ISMRM Benelux Chapter, vol. 8. 2016.
G. Van Steenkiste, “Super-resolution estimation of quantitative MRI parameters”, University of Antwerp, 2016.PDF icon Download PhD thesis (7.56 MB)
G. Van Steenkiste, Jeurissen, B., Veraart, J., den Dekker, A. J., Parizel, P. M., Poot, D. H. J., and Sijbers, J., “Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations”, Magnetic Resonance in Medicine, vol. 75, no. 1, pp. 181-195, 2016.
2015
G. Van Steenkiste, Hamaide, J., Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Sijbers, J., and Verhoye, M., “Combination of super-resolution reconstruction diffusion tensor imaging and track density imaging reveals song control system connectivity in zebra finches”, ISMRM 23th Annual Meeting, Toronto, Ontario, Canada, vol. 23. p. 2861, 2015.PDF icon Download abstract (108.98 KB)
G. Van Steenkiste, Hamaide, J., Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Sijbers, J., and Verhoye, M., “Combination of super-resolution reconstruction diffusion tensor imaging and track density imaging reveals song control system connectivity in zebra finches”, Proc. Intl. Soc. Mag. Reson. Med. 23. p. 2861, 2015.
G. Van Steenkiste, Jeurissen, B., Baete, S., den Dekker, A. J., Poot, D. H. J., Boada, F., and Sijbers, J., “High resolution diffusion tensor imaging in a clinically feasible scan time”, Front. Neuroinform. Conference Abstract: Second Belgian Neuroinformatics Congress. 2015.
G. Van Steenkiste, Poot, D. H. J., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “High resolution T1 estimation from multiple low resolution magnetic resonance images”, in IEEE International Symposium on Biomedical Imaging (ISBI): From nano to macro, 2015, vol. 12, pp. 1036-1039.
G. Van Steenkiste, Hamaide, J., Jeurissen, B., Poot, D. H. J., Van Audekerke, J., Sijbers, J., and Verhoye, M., “Super-resolution structural connectivity and anatomy of the zebra finch brain ”, ISMRM Benelux. 2015.
G. Van Steenkiste, Poot, D. H. J., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Super-resolution T1 mapping: a simulation study”, ISMRM 23th Annual Meeting, Toronto, Ontario, Canada, vol. 23. p. 1679, 2015.PDF icon Download abstract (1.22 MB)

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