Publications

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1996
J. Sijbers, Scheunders, P., Bonnet, N., Van Dyck, D., and Raman, E., “Quantification and improvement of the signal-to-noise ratio in a magnetic resonance image acquisition procedure”, Magnetic Resonance Imaging, vol. 14, pp. 1157-1163, 1996.PDF icon Download paper (1.31 MB)
1997
J. Sijbers, Verhoye, M., Scheunders, P., Van Der Linden, A., Van Dyck, D., and Raman, E., “Watershed based segmentation of 3D MR data for volume quantization”, Magnetic Resonance Imaging, vol. 15, pp. 679-688, 1997.PDF icon Download paper (3.18 MB)
1998
E. Fransen, Dhooghe, R., Van Camp, G., Verhoye, M., Sijbers, J., Reyniers, E., Soriano, P., Kamiguchi, H., Willemsen, R., Koekoek, K. E., Zeeuw, D. C. I., De Deyn, P. P., Van Der Linden, A., Lemmon, V., Kooy, R. F., and Willems, P. J., “L1 knockout mice show dilated ventricles, vermis hypoplasia and impaired exploration patterns”, Human Molecular Genetics, vol. 7, pp. 999-1009, 1998.PDF icon Download paper (248.02 KB)
1999
R. F. Kooy, Reyniers, E., Verhoye, M., Sijbers, J., Cras, P., Oostra, B. A., Willems, P. J., and Van Der Linden, A., “Neuroanatomy of the fragile X knockout mouse brain studied using in vivo high resolution Magnetic Resonance Imaging (MRI)”, European Journal of Human Genetics, vol. 7, pp. 526-532, 1999.PDF icon ejhg99.pdf (261.08 KB)
J. Sijbers, den Dekker, A. J., Raman, E., and Van Dyck, D., “Parameter estimation from magnitude MR images”, International Journal of Imaging Systems and Technology, vol. 10, pp. 109-114, 1999.PDF icon Download paper (350.44 KB)
2002
E. Van de Casteele, Van Dyck, D., Sijbers, J., and Raman, E., “An energy-based beam hardening model in tomography”, Physics in Medicine and Biology, vol. 47, pp. 4181-4190, 2002.PDF icon Download full paper (203.21 KB)
2003
W. D'haes, Van Dyck, D., and Rodet, X., “PCA-based Branch and Bound Search Algorithms for Computing K Nearest Neighbors”, Pattern Recognition Letters, vol. 24, pp. 1437-1451, 2003.
2004
E. Van de Casteele, Van Dyck, D., Sijbers, J., and Raman, E., “A model-based correction method for beam hardening artefacts in X-ray microtomography”, Journal of X-ray science and technology, vol. 12, pp. 53-57, 2004.PDF icon Download full paper (632.04 KB)
2009
C. A. Sage, Van Hecke, W., Peeters, R. R., Sijbers, J., Robberecht, W., Parizel, P. M., Marchal, G., Leemans, A., and Sunaert, S., “Quantitative diffusion tensor imaging in amyotrophic lateral sclerosis: revisited.”, Human brain mapping, vol. 30, no. 11, pp. 3657-75, 2009.
2010
J. Juntu, Sijbers, J., De Backer, S., Rajan, J., and Van Dyck, D., “A Machine Learning Study of Several Classifiers Trained with Texture Analysis Features to Differentiate Benign from Malignant Soft Tissue Tumors in T1-MRI Images”, Journal of Magnetic Resonance Imaging, vol. 31, pp. 680–689, 2010.PDF icon Download paper (300.61 KB)
J. Rajan, Poot, D. H. J., Juntu, J., and Sijbers, J., “Noise measurement from magnitude MRI using local estimates of variance and skewness.”, Physics in medicine and biology, vol. 55, no. 16, pp. N441-9, 2010.PDF icon Download paper (219.85 KB)
2011
J. Rajan, Jeurissen, B., Verhoye, M., Van Audekerke, J., and Sijbers, J., “Maximum likelihood estimation based denoising of magnetic resonance images using restricted local neighborhoods”, Physics in Medicine and Biology, vol. 56, pp. 5221-5234, 2011.PDF icon Download full paper (643.93 KB)
P. Fillard, Descoteaux, M., Goh, A., Gouttard, S., Jeurissen, B., Malcolm, J., Ramirez-Manzanares, A., Reisert, M., Sakaie, K., Tensaouti, F., Yo, T. - S., Mangin, J. - F., and Poupon, C., “Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom”, NeuroImage, vol. 56, pp. 220-234, 2011.
P. Fillard, Descoteaux, M., Goh, A., Gouttard, S., Jeurissen, B., Malcolm, J., Ramirez-Manzanares, A., Reisert, M., Sakaie, K., Tensaouti, F., Yo, T. - S., Mangin, J. - F., and Poupon, C., “Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom”, NeuroImage, vol. 56, pp. 220-234, 2011.
Z. Mai, Rajan, J., Verhoye, M., and Sijbers, J., “Robust edge-directed interpolation of magnetic resonance images”, Physics in medicine and biology, vol. 56, pp. 7287-7303, 2011.PDF icon Download paper (1.3 MB)
2012
T. Roelandts, Batenburg, K. J., Biermans, E., Kubel, C., Bals, S., and Sijbers, J., “Accurate segmentation of dense nanoparticles by partially discrete electron tomography”, Ultramicroscopy, vol. 114, pp. 96-105, 2012.PDF icon Download paper (1.71 MB)
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
P. Lo, van Ginneken, B., Reinhardt, J. M., Yavarna, T., de Jong, P. A., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijańska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O., van Rikxoort, E. M., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H., and de Bruijne, M., “Extraction of airways from CT (EXACT'09).”, IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2093-107, 2012.
I. Blockx, Verhoye, M., Van Audekerke, J., Bergwerf, I., Kane, J. X., Delgado Y Palacios, R., Veraart, J., Jeurissen, B., Raber, K., Von Hörsten, S., Ponsaerts, P., Sijbers, J., Leergaard, T. B., and Van Der Linden, A., “Identification and characterization of Huntington related pathology: an in vivo DKI imaging study”, NeuroImage, vol. 63, no. 2, pp. 653-662, 2012.
Y. D. Reijmer, Leemans, A., Heringa, S. M., Wielaard, I., Jeurissen, B., Koek, H. L., and Biessels, G. J., “Improved sensitivity to cerebral white matter abnormalities in Alzheimer's disease with spherical deconvolution based tractography.”, PloS one, vol. 7, no. 8, p. e44074, 2012.
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., “Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.”, NeuroImage, vol. 59, pp. 957-67, 2012.
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images.”, Magnetic resonance imaging, vol. 30, no. 10, pp. 1512-8, 2012.
J. Rajan, Veraart, J., Van Audekerke, J., Verhoye, M., and Sijbers, J., “Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images”, Magnetic Resonance Imaging, vol. 30, no. 10, pp. 1512-1518, 2012.PDF icon Download full paper (1.11 MB)
2013
B. Goris, Roelandts, T., Batenburg, K. J., Heidari Mezerji, H., and Bals, S., “Advanced reconstruction algorithms for electron tomography: from comparison to combination”, Ultramicroscopy, vol. 127, pp. 40–47, 2013.

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