Publications

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2016
W. J. Palenstijn, Bédorf, J., Sijbers, J., and Batenburg, K. J., “A distributed ASTRA Toolbox”, Advanced Structural and Chemical Imaging, vol. 2, no. 19, 2016.PDF icon Download paper (2.7 MB)
F. Bleichrodt, van Leeuwen, T., Palenstijn, W. J., Van Aarle, W., Sijbers, J., and Batenburg, K. J., “Easy implementation of advanced tomography algorithms using the ASTRA toolbox with Spot operators”, Numerical Algorithms, vol. 71, pp. 673-697, 2016.
W. Van Aarle, Palenstijn, W. J., Cant, J., Janssens, E., Bleichrodt, F., Dabravolski, A., De Beenhouwer, J., Batenburg, K. J., and Sijbers, J., “Fast and Flexible X-ray Tomography Using the ASTRA Toolbox”, Optics Express, vol. 24, pp. 25129-25147, 2016.PDF icon Download paper (8.34 MB)
D. Pelt, Gursoy, D., Palenstijn, W. J., Sijbers, J., De Carlo, F., and Batenburg, K. J., “Integration of TomoPy and the ASTRA toolbox for advanced processing and reconstruction of tomographic synchrotron data”, Journal of Synchrotron Radiation, vol. 23, pp. 842-849, 2016.
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., de Nijs, B., van Huis, M. A., Sánchez-Iglesias, A., Liz-Marzán, L. M., van Blaaderen, A., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies.”, Nanoscale, vol. 8, no. 1, pp. 292-9, 2016.
2015
W. Van Aarle, Palenstijn, W. J., De Beenhouwer, J., Altantzis, T., Bals, S., Batenburg, K. J., and Sijbers, J., “The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography”, Ultramicroscopy, vol. 157, pp. 35–47, 2015.PDF icon Download paper (3.47 MB)
J. Cant, Palenstijn, W. J., Behiels, G., and Sijbers, J., “Modeling blurring effects due to continuous gantry rotation: application to region of interest tomography”, Medical Physics, vol. 42, no. 5, pp. 2709-2717, 2015.
G. Ramos-Llordén, Segers, H., Palenstijn, W. J., den Dekker, A. J., and Sijbers, J., “Partial discreteness: a new type of prior knowledge for MRI reconstruction”, 23rd Annual meeting of the ISMRM, Toronto, Canada., vol. 23. p. 3417, 2015.PDF icon Download abstract (1.14 MB)
G. Ramos-Llordén, Segers, H., Palenstijn, W. J., den Dekker, A. J., and Sijbers, J., “Partially discrete magnetic resonance tomography”, in 2015 IEEE International Conference on Image Processing (ICIP), 2015, pp. 1653-1657.
D. Zanaga, Bleichrodt, F., Altantzis, T., Winckelmans, N., Palenstijn, W. J., Sijbers, J., van Nijs, B., van Huis, M. A., van Blaaderen, A., Sánchez-Iglesias, A., Liz-Marzán, L. M., Batenburg, K. J., Bals, S., and Van Tendeloo, G., “Quantitative 3D analysis of huge nanoparticle assemblies”, Nanoscale, vol. 8, no. 1, pp. 292-299, 2015.
2014
K. J. Batenburg, Palenstijn, W. J., and Sijbers, J., “3D imaging of semiconductor components by discrete laminography”, in Stress induced phenomena and reliability in 3D microelectronics: AIP Conference Proceedings, 2014, vol. 1601, pp. 168-179.PDF icon Download paper (1.81 MB)
J. Cant, Palenstijn, W. J., Behiels, G., and Sijbers, J., “Tomographic image reconstruction from continuous projections”, in The third international conference on image formation in X-ray computed tomography, Salt Lake City, USA, 2014, pp. 295-298.PDF icon Download paper (2.38 MB)
2013
P. Reischig, King, A., Nervo, L., Viganó, N., Guilhem, Y., Palenstijn, W. J., Batenburg, K. J., Preuss, M., and Ludwig, W., “Advances in X-ray diffraction contrast tomography: flexibility in the setup geometry and application to multiphase materials”, Journal of Applied Crystallography, vol. 46, no. 2, pp. 297 - 311, 2013.
W. J. Palenstijn, Batenburg, K. J., and Sijbers, J., “The ASTRA Tomography Toolbox”, in 13th International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE 2013, 2013, vol. 4, pp. 1139-1145.PDF icon cmmse2013.pdf (174.19 KB)
H. Segers, Palenstijn, W. J., Batenburg, K. J., and Sijbers, J., “Discrete Tomography in MRI: a proof of concept”, Proc. Intl. Soc. Mag. Reson. Med, vol. 21. p. 2662, 2013.
H. Segers, Palenstijn, W. J., Batenburg, K. J., and Sijbers, J., “Discrete Tomography in MRI: a Simulation Study”, Fundamenta Informaticae, vol. 125, no. 3-4, pp. 223-237, 2013.
K. J. Batenburg, Palenstijn, W. J., Balazs, P., and Sijbers, J., “Dynamic angle selection in binary tomography”, Computer Vision and Image Understanding, vol. 117, no. 5, pp. 306–318, 2013.PDF icon Download paper (2.71 MB)
2012
J. De Beenhouwer, Palenstijn, W. J., Bleichrodt, F., Batenburg, K. J., and Sijbers, J., “A framework for markerless alignment with full 3D flexibility”, European Microscopy Conference. 2012.PDF icon Download abstract (117.9 KB)
H. Segers, Palenstijn, W. J., Batenburg, K. J., and Sijbers, J., “Segmentation of MR Images by k-space distance minimization: a proof of concept”, ESMRMB CONGRESS 2012: 29th Annual Scientific Meeting, vol. 25, no. 1. pp. 63-64, 2012.PDF icon Download abstract (221.41 KB)
L. Plantagie, Palenstijn, W. J., Sijbers, J., and Batenburg, K. J., “Spatial Variations in Reconstruction Methods for CT”, in The Second International Conference on Image Formation in X-Ray Computed Tomography (CT Meeting), 2012, pp. 170-173.
B. de Smit, McClure, M., Palenstijn, W. J., Sparling, I. E., and Wagon, S., “Through the Looking-Glass, and What the Quadratic Camera Found There”, The Mathematical Intelligencer, vol. 34, no. 3, pp. 30 - 34, 2012.
2011
W. J. Palenstijn, Batenburg, K. J., and Sijbers, J., “Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)”, Journal of structural biology, vol. 176, no. 2, pp. 250-253, 2011.PDF icon Download paper (527.21 KB)
2010
K. J. Batenburg, Palenstijn, W. J., and Sijbers, J., “Projection and backprojection in tomography: design choices and considerations”, in Workshop on Applications of Discrete Geometry and Mathematical Morphology, 2010, pp. 106-110.PDF icon Download paper (367.34 KB)