Publications

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J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Atom column detection from simultaneously acquired ABF and ADF STEM images”, Ultramicroscopy, vol. 219, p. 113046, 2020.
J. Fatermans, den Dekker, A. J., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Atom column detection from STEM images using the maximum a posteriori probability rule”, MC 2019, Berlin, Germany. 2019.
J. Fatermans, Van Aert, S., and den Dekker, A. J., “The maximum a posteriori probability rule for atom column detection from HAADF STEM images”, Ultramicroscopy, vol. 201, pp. 81-91, 2019.
J. Fatermans, Van Aert, S., and den Dekker, A. J., “Bayesian model-order selection in electron microscopy to detect atomic columns in noisy images”, RBSM 2016, Brussels, Belgium. p. 53, 2016.
J. Fatermans, den Dekker, A. J., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Bayesian model selection for atom column detection from ABF-ADF STEM images”, Virtual Early Career EMC 2020 (online), Copenhagen, Denmark. 2020.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “The maximum a posteriori probability rule to detect single atoms from low signal-to-noise ratio scanning transmission electron microscopy images”, IMC19, Sydney, Australia. 2018.
J. Fatermans, De Backer, A., den Dekker, A. J., and Van Aert, S., “Chapter Seven - Image-quality evaluation and model selection with maximum a posteriori probability”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., O'Leary, C. M., Nellist, P. D., and Van Aert, S., “Single Atom Detection from Low Contrast-to-Noise Ratio Electron Microscopy Images”, Phys. Rev. Lett., vol. 121, p. 056101, 2018.
J. Fatermans, “Quantitative atom detection from atomic-resolution transmission electron microscopy images”, 2019.PDF icon Download thesis (29.73 MB)
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Lobato, I., and Van Aert, S., “Bayesian analysis of noisy scanning transmission electron microscopy images for single atom detection”, SCANDEM 2018, Technical University of Denmark, Kgs. Lyngby, Denmark. p. 95, 2018.
J. Fatermans, den Dekker, A. J., and Van Aert, S., “Atom detection from electron microscopy images”, RBSM 2019, Louvain-la-Neuve, Belgium. p. 15, 2019.
J. Fatermans, Müller-Caspary, K., den Dekker, A. J., and Van Aert, S., “Detection of atomic columns from noisy STEM images”, Microscopy Conference 2017 (MC 2017), Lausanne, Switzerland. pp. 445-446, 2017.
J. Fatermans, De Backer, A., den Dekker, A. J., and Van Aert, S., “Chapter Six - Atom column detection”, in Advances in Imaging and Electron Physics, vol. 217, Science Direct Elsevier, 2021.
P. Fillard, Descoteaux, M., Goh, A., Gouttard, S., Jeurissen, B., Malcolm, J., Ramirez-Manzanares, A., Reisert, M., Sakaie, K., Tensaouti, F., Yo, T. - S., Mangin, J. - F., and Poupon, C., “Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom”, NeuroImage, vol. 56, pp. 220-234, 2011.
N. J. Forde, Scanlon, C., Emsell, L., O'Donoghue, S., Chaddock, C., Leemans, A., Jeurissen, B., Cannon, D. M., Murray, R. M., and McDonald, C., “Structural brain network analysis in families multiply affected with bipolar 1 disorder”, International Review of Psychosis & Bipolarity. Athens, Greece, 2014.
N. J. Forde, Ellison-Wright, I., Nathan, P. J., Zaman, R., Dudas, R., Agius, M., Fernandez-Egea, E., Leemans, A., Jeurissen, B., Scanlon, C., McDonald, C., and Cannon, D. M., “White Matter Tract Deficits in Schizophrenia”, Neuroscience Ireland Conference, vol. 7. Dublin, Ireland, 2011.
N. J. Forde, O'Donoghue, S., Scanlon, C., Emsell, L., Chaddock, C., Leemans, A., Jeurissen, B., Barker, G. J., Cannon, D. M., Murray, R. M., and others, “Structural brain network analysis in families multiply affected with bipolar I disorder”, Psychiatry Research: Neuroimaging, vol. 234, pp. 44–51, 2015.
N. J. Forde, Ronan, L., Suckling, J., Scanlon, C., Neary, S., Holleran, L., Leemans, A., Tait, R., Rua, C., Fletcher, P. C., Jeurissen, B., Dodds, C. M., Miller, S. R., Bullmore, E. T., McDonald, C., Nathan, P. J., and Cannon, D. M., “Structural neuroimaging correlates of allelic variation of the BDNF val66met polymorphism.”, NeuroImage, vol. 90, pp. 280-9, 2014.
W. Fortes, Sijbers, J., and Batenburg, K. J., “Practical Error Bounds for Binary Tomography”, in 1st International Conference on Tomography of Materials and Structures, 2013, pp. 97-100.PDF icon Download paper (165.74 KB)
N. Francken, Paramonov, P., Sijbers, J., and De Beenhouwer, J., “Edge Illumination Phase Contrast Simulations Using the OptiX GPU Ray Tracing Engine”, 5th International Conference on Tomography of Materials & Structures (ICTMS). 2022.
N. Francken, Sanctorum, J., Sanctorum, J., Vanthienen, P. - J., Sijbers, J., and De Beenhouwer, J., “Inline edge illumination X-ray phase contrast imaging through mask misalignment”, Optics Express, vol. 32, no. 18, pp. 32048-32061, 2024.PDF icon Download paper (1.69 MB)
N. Francken, Sanctorum, J., Renders, J., Paramonov, P., Sijbers, J., and De Beenhouwer, J., “A condensed history approach to x-ray dark field effects in edge illumination phase contrast simulations”, in 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2023.PDF icon Download paper (4.14 MB)
N. Francken, Paramonov, P., Sijbers, J., and De Beenhouwer, J., “Enhancing industrial inspection with efficient edge illumination x-ray phase contrast simulations”, in IEEE EUROCON 2023 -20th International Conference on Smart Technologies, Torino, Italy, 2023.PDF icon eurocon_2023.pdf (8.52 MB)
N. Francken, Sanctorum, J., Paramonov, P., Sijbers, J., and De Beenhouwer, J., “Edge illumination x-ray phase contrast simulations using the CAD-ASTRA toolbox”, Optics Express, vol. 32, no. 6, pp. 10005-10021, 2024.
E. Fransen, Dhooghe, R., Van Camp, G., Verhoye, M., Sijbers, J., Reyniers, E., Soriano, P., Kamiguchi, H., Willemsen, R., Koekoek, K. E., Zeeuw, D. C. I., De Deyn, P. P., Van Der Linden, A., Lemmon, V., Kooy, R. F., and Willems, P. J., “L1 knockout mice show dilated ventricles, vermis hypoplasia and impaired exploration patterns”, Human Molecular Genetics, vol. 7, pp. 999-1009, 1998.PDF icon Download paper (248.02 KB)

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