Publications

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Journal Article
S. Cools, Ghysels, P., Van Aarle, W., Sijbers, J., and Vanroose, W., “A multi-level preconditioned Krylov method for the efficient solution of algebraic tomographic reconstruction problems”, Journal of Computational and Applied Mathematics, vol. 238, no. 1, pp. 1-16, 2015.
R. Heylen and Scheunders, P., “Multi-dimensional pixel purity index for convex hull estimation and endmember extraction”, IEEE Transactions on Geoscience and Remote Sensing, vol. 51, no. 7, pp. 4059-4069, 2013.
J. Sanctorum, Sijbers, J., and De Beenhouwer, J., “Multi-contrast benchmarking of edge illumination Monte Carlo simulations using virtual gratings”, Journal of Applied Physics, vol. 137, no. 10, p. 104904, 2025.
J. Driesen and Scheunders, P., “A Multicomponent Image Segmentation Framework”, Lecture Notes in Computer Science, vol. 5259, pp. 589-600, 2008.
A. Duijster, De Backer, S., and Scheunders, P., “Multicomponent image restoration, an experimental study”, Lecture Notes in Computer Science, vol. 4633, pp. 58-68, 2007.
K. Rafiezadeh Sahi, Ghamisi, P., Rasti, B., Gloaguen, R., and Scheunders, P., “MS2A-Net: multi-view spectral-spatial association network for hyperspectral image clustering”, IEEE-JSTARS, Journal of Selected Topics in Applied Earth Observations and Remote Sensing, vol. 15, pp. 6518-6530, 2022.PDF icon ms2a-net_multiscale_spectralspatial_association_network_for_hyperspectral_image_clustering.pdf (12.33 MB)
J. - D. Tournier, Smith, R., Raffelt, D., Tabbara, R., Dhollander, T., Pietsch, M., Christiaens, D., Jeurissen, B., Yeh, C. - H., and Connelly, A., “MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation.”, Neuroimage, p. 116137, 2019.
V. Van Nieuwenhove, De Beenhouwer, J., Vlassenbroeck, J., Brennan, M., and Sijbers, J., “MoVIT: A tomographic reconstruction framework for 4D-CT”, Optics Express, vol. 25, no. 16, pp. 19236-19250, 2017.
S. De Backer, Cornelissen, F., Lemeire, J., Nuydens, R., Meert, T., Schelkens, P., and Scheunders, P., “Mosiacing of Fibered Fluorescence Microscopy Video”, Lecture notes in Computer Science, vol. 5259, pp. 915-923, 2008.
N. Van Camp, Vreys, R., Van Laere, K., Lauwers, E., Beque, D., Verhoye, M., Casteels, C., Verbruggen, A., Debyser, Z., Mortelmans, L., Sijbers, J., Nuyts, J., Baekelandt, V., and Van Der Linden, A., “Morphologic and functional changes in the unilateral 6-hydroxydopamine lesion rat model for Parkinson's disease discerned with microSPECT and quantitative MRI.”, Magnetic Resonance Materials in Physics, Biology and Medicine, vol. 23, no. 2, pp. 65-75, 2010.
J. Veraart, Poot, D. H. J., Van Hecke, W., Blockx, I., Van Der Linden, A., Verhoye, M., and Sijbers, J., “More accurate estimation of diffusion tensor parameters using diffusion kurtosis imaging”, Magnetic Resonance in Medicine, vol. 65, pp. 138-145, 2011.PDF icon Download paper (387.31 KB)
E. Nazemi, Six, N., Iuso, D., De Samber, B., Sijbers, J., and De Beenhouwer, J., “Monte-Carlo-Based Estimation of the X-ray Energy Spectrum for CT Artifact Reduction”, Applied Sciences, vol. 11, no. 7, 2021.PDF icon Download paper (4.96 MB)
H. Aerts, Schirner, M., Jeurissen, B., Van Roost, D., Achten, E., Ritter, P., and Marinazzo, D., “Modeling brain dynamics in brain tumor patients using The Virtual Brain”, eNeuro, 2018.
J. Cant, Palenstijn, W. J., Behiels, G., and Sijbers, J., “Modeling blurring effects due to continuous gantry rotation: application to region of interest tomography”, Medical Physics, vol. 42, no. 5, pp. 2709-2717, 2015.
E. Bettens, Van Dyck, D., den Dekker, A. J., Sijbers, J., and van den Bos, A., “Model-based two-object resolution from observations having counting statistics”, Ultramicroscopy, vol. 77, pp. 37-48, 1999.PDF icon Download full paper (226 KB)
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping”, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
E. Van de Casteele, Van Dyck, D., Sijbers, J., and Raman, E., “A model-based correction method for beam hardening artefacts in X-ray microtomography”, Journal of X-ray science and technology, vol. 12, pp. 53-57, 2004.PDF icon Download full paper (632.04 KB)
P. Kempeneers, Zarco-Tejada, P. J., North, P. R. J., De Backer, S., Delalieux, S., Sepulcre-Canto, G., Morales, F., van Aardt, J., Sagardoy, R., Coppin, P., and Scheunders, P., “Model inversion for chlorophyll estimation in open canopies from hyperspectral imagery”, International Journal of Remote Sensing, vol. 29, pp. 5093-5111, 2008.
B. Rasti, Koirala, B., Scheunders, P., and Chanussot, J., “MiSiCNet: Minimum Simplex Convolutional Network for Deep Hyperspectral Unmixing”, IEEE Transactions on Geoscience and Remote Sensing, vol. 60, no. 5522815, 2022.PDF icon misicnet_ieee_tgrs_author_version.pdf (5.57 MB)
I. Blockx, De Groof, G., Verhoye, M., Van Audekerke, J., Raber, K., Poot, D. H. J., Sijbers, J., Osmand, A. P., Von Hörsten, S., and Van Der Linden, A., “Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment.”, NeuroImage, vol. 59, pp. 957-67, 2012.
J. Sanctorum, Adriaens, D., Dirckx, J. J. J., Sijbers, J., Van Ginneken, C., Aerts, P., and Van Wassenbergh, S., “Methods for characterization and optimisation of measuring performance of stereoscopic x-ray systems with image intensifiers”, Measurement Science and Technology, vol. 30, no. 10, 2019.
W. Van den Broek, Rosenauer, A., Sijbers, J., Van Dyck, D., and Van Aert, S., “A memory efficient method for fully three-dimensional object reconstruction with HAADF STEM Ultramicroscopy”, Ultramicroscopy, vol. 141, pp. 22–31, 2014.
B. Goris, De Beenhouwer, J., De Backer, A., Zanaga, D., Batenburg, K. J., Sánchez-Iglesias, A., Liz-Marzán, L. M., Van Aert, S., Bals, S., Sijbers, J., and Van Tendeloo, G., “Measuring Lattice Strain in Three Dimensions through Electron Microscopy”, Nano Letters, vol. 15, no. 10, pp. 6996–7001, 2015.
J. Sijbers and den Dekker, A. J., “Maximum Likelihood estimation of signal amplitude and noise variance from MR data”, Magnetic Resonance in Medicine, vol. 51, pp. 586-594, 2004.PDF icon Download full paper (295.12 KB)

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