Publications

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Journal Article
E. Bettens, Van Dyck, D., den Dekker, A. J., Sijbers, J., and van den Bos, A., “Model-based two-object resolution from observations having counting statistics”, Ultramicroscopy, vol. 77, pp. 37-48, 1999.PDF icon Download full paper (226 KB)
Q. Beirinckx, Jeurissen, B., Nicastro, M., Poot, D. H. J., Verhoye, M., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping”, Computerized Medical Imaging and Graphics, vol. 100, no. 102071, pp. 1-16, 2022.PDF icon Download paper (15.42 MB)PDF icon Download supplementary material (1.35 MB)
Q. Beirinckx, Bladt, P., van der Plas, M. C. E., van Osch, M. J. P., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling”, NeuroImage, vol. 286, p. 120506, 2024.PDF icon Download paper (7.23 MB)PDF icon Download supplementary material (20.75 MB)
J. Sijbers and den Dekker, A. J., “Maximum Likelihood estimation of signal amplitude and noise variance from MR data”, Magnetic Resonance in Medicine, vol. 51, pp. 586-594, 2004.PDF icon Download full paper (295.12 KB)
J. Sijbers, den Dekker, A. J., Scheunders, P., and Van Dyck, D., “Maximum Likelihood estimation of Rician distribution parameters”, IEEE Transactions on Medical Imaging, vol. 17, pp. 357-361, 1998.PDF icon Download paper (106.26 KB)
J. Fatermans, Van Aert, S., and den Dekker, A. J., “The maximum a posteriori probability rule for atom column detection from HAADF STEM images”, Ultramicroscopy, vol. 201, pp. 81-91, 2019.
J. Sijbers, den Dekker, A. J., and Bos, R., “A likelihood ratio test for functional MRI data analysis to account for colored noise”, Lecture Notes in Computer Science, vol. 3708, pp. 538-546, 2005.PDF icon Download full paper (483.15 KB)
A. J. den Dekker, Poot, D. H. J., Bos, R., and Sijbers, J., “Likelihood based hypothesis tests for brain activation detection from MRI data disturbed by colored noise: a simulation study”, IEEE Transactions on Medical Imaging, vol. 28, pp. 287-296, 2009.
Q. Beirinckx, Ramos-Llordén, G., Jeurissen, B., Poot, D. H. J., Parizel, P. M., Verhoye, M., Sijbers, J., and den Dekker, A. J., “Joint Maximum Likelihood estimation of motion and T1 parameters from magnetic resonance images in a super-resolution framework: a simulation study”, Fundamenta Informaticae, vol. 172, pp. 105–128, 2020.PDF icon Download paper (final author version) (2.15 MB)
Q. Collier, Veraart, J., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Iterative Reweighted Linear Least Squares for Accurate, Fast, and Robust Estimation of Diffusion Magnetic Resonance Parameters”, Magnetic Resonance in Medicine, vol. 73, no. 6, pp. 2174–2184, 2015.
V. Anania, Collier, Q., Veraart, J., Buikema, A. Eline, Vanhevel, F., Billiet, T., Jeurissen, B., den Dekker, A. J., and Sijbers, J., “Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model”, NeuroImage, vol. 256, p. 119219, 2022.
A. J. den Dekker and Sijbers, J., “Implications of the Rician distribution for fMRI generalized likelihood ratio tests”, Magnetic Resonance Imaging, vol. 23, pp. 953-959, 2005.PDF icon Download paper (1.36 MB)
A. J. den Dekker, Sijbers, J., and Van Dyck, D., “How to optimize the design of a quantitative HREM experiment so as to attain the highest precision”, Journal of Microscopy, vol. 194, pp. 95-104, 1999.PDF icon Download full paper (601.48 KB)
M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P. - J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J., “Harmonisation of Brain Diffusion MRI: Concepts and Methods”, Frontiers in Neuroscience , vol. 14, pp. 1-17, 2020.PDF icon Download paper (2.61 MB)
J. Sijbers and den Dekker, A. J., “Generalized likelihood Ratio tests for complex fMRI data: a simulation study”, IEEE Transactions on Medical Imaging, vol. 24, pp. 604-611, 2005.PDF icon Download paper (377.11 KB)
D. Van Dyck, Bettens, E., Sijbers, J., Op de Beeck, M., den Dekker, A. J., and van den Bos, A., “From High Resolution Image to Atomic Structure: how fare are we?”, Scanning Microscopy, Special Issue on Image Processing, vol. 11, pp. 467-478, 1997.
A. J. den Dekker, Gonnissen, J., De Backer, A., Sijbers, J., and Van Aert, S., “Estimation of unknown structure parameters from high-resolution (S)TEM images: what are the limits?”, Ultramicroscopy, vol. 134, pp. 34-43, 2013.
J. Sijbers, den Dekker, A. J., Van Audekerke, J., Verhoye, M., and Van Dyck, D., “Estimation of the noise in magnitude MR images”, Magnetic Resonance Imaging, vol. 16, pp. 87-90, 1998.PDF icon Download paper (64.9 KB)
Q. Collier, Veraart, J., Jeurissen, B., Vanhevel, F., Pullens, P., Parizel, P. M., den Dekker, A. J., and Sijbers, J., “Diffusion kurtosis imaging with free water elimination: a Bayesian estimation approach”, Magnetic Resonance in Medicine, vol. 80, no. 2, pp. 802-813, 2018.PDF icon Download paper (1.93 MB)
J. Gonnissen, De Backer, A., den Dekker, A. J., Sijbers, J., and Van Aert, S., “Detecting and locating light atoms from high-resolution STEM images: the quest for a single optimal design Ultramicroscopy”, Ultramicroscopy, vol. 170, pp. 128-138, 2016.
A. J. den Dekker and Sijbers, J., “Data distributions in magnetic resonance images: a review”, Physica Medica, vol. 30, no. 7, pp. 725–741, 2014.PDF icon Download paper (410.33 KB)PDF icon Download paper (protected) (505.58 KB)
P. Bladt, den Dekker, A. J., Clement, P., Achten, E., and Sijbers, J., “The costs and benefits of estimating T1 of tissue alongside cerebral blood flow and arterial transit time in pseudo-continuous arterial spin labeling”, NMR in Biomedicine, vol. 33, no. 12, pp. 1-17, 2020.PDF icon Download paper (16.44 MB)
J. Sijbers, Poot, D. H. J., den Dekker, A. J., and Pintjens, W., “Automatic estimation of the noise variance from the histogram of a magnetic resonance image”, Physics in Medicine and Biology, vol. 52, pp. 1335-1348, 2007.PDF icon Download paper (297.18 KB)
J. Gonnissen, De Backer, A., den Dekker, A. J., Sijbers, J., and Van Aert, S., “Atom-counting in High Resolution Electron Microscopy: TEM or STEM - that’s the question”, Ultramicroscopy, vol. 147, pp. 112–120, 2017.
J. Fatermans, den Dekker, A. J., Müller-Caspary, K., Gauquelin, N., Verbeeck, J., and Van Aert, S., “Atom column detection from simultaneously acquired ABF and ADF STEM images”, Ultramicroscopy, vol. 219, p. 113046, 2020.

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